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[191097_at] 7TM chemoreceptor, sri family

Description ZC239.9 /REP_DB=WormBase Gene ID /WP=CE15126 /GEN=sri-48 /TR=P91552 /GB=AAB37947.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 26      4grp_total > 03      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 11.4
(-2.7)
A 		5.4
(-3)
A 		8.1
(-2.9)
A 		133.8
(3)
A 		128
B 46.2
(3)
A 		12.2
(-3)
A 		30.3
(0.2)
A 		40.1
(1.9)
A 		34
C 11.2
(-2.5)
A 		15.9
(-2)
A 		7.1
(-3)
A 		61.7
(3)
A 		55
avr 22.9
(-2) 		11.2
(-3) 		15.2
(-2.6) 		78.5
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 36.6
(3)
A 		32.5
(2.1)
A 		27.3
(1)
A 		8.7
(-3)
A 		11
(-2.5)
A 		10.8
(-2.5)
A 		28
B 13.6
(-2.2)
A 		37.1
(3)
A 		10.2
(-3)
A 		16.9
(-1.5)
A 		33.4
(2.2)
A 		36.2
(2.8)
A 		27
C 21.9
(-0.2)
A 		10.9
(-2.5)
A 		8.9
(-2.9)
A 		37.8
(3)
A 		8.3
(-3)
A 		9.8
(-2.7)
A 		30
avr 24
(1.5) 		26.8
(3) 		15.5
(-3) 		21.1
(-0) 		17.6
(-1.9) 		18.9
(-1.2) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.1
(-2.1)
A 		1.2
(-3)
A 		2.1
(-2.7)
A 		19.6
(3)
A 		18
B 14.7
(3)
A 		3
(-3)
A 		7
(-0.9)
A 		8.6
(-0.1)
A 		12
C 3.7
(-2.1)
A 		4.6
(-1.4)
A 		2.5
(-3)
A 		10.4
(3)
A 		8
avr 7.5
(-0.2) 		2.9
(-3) 		3.9
(-2.4) 		12.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.7
(-0.1)
A 		11.5
(3)
A 		5.9
(-0.6)
A 		2.2
(-3)
A 		3.3
(-2.3)
A 		2.6
(-2.7)
A 		9
B 4.7
(-1.8)
A 		12.4
(2.4)
A 		2.5
(-3)
A 		4.5
(-1.9)
A 		13.6
(3)
A 		13.5
(2.9)
A 		11
C 8.1
(3)
A 		3.3
(-2)
A 		2.3
(-3)
A 		7.6
(2.5)
A 		2.7
(-2.6)
A 		3.3
(-2)
A 		6
avr 6.5
(0.2) 		9.1
(3) 		3.6
(-3) 		4.8
(-1.7) 		6.5
(0.2) 		6.5
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5440
Sequence Type Exemplar sequence
Representative Public ID ZC239.9 NCBI
Target Description ZC239.9 /REP_DB=WormBase Gene ID /WP=CE15126 /GEN=sri-48 /TR=P91552 /GB=AAB37947.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062069(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062069 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-48) (sri-48) mRNA, complete cds. 11/11 None
GENEFINDER00000024303 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3192419:3200901:-1 11/11 None
ZC239.9 ENSEMBL cdna:known chromosome:CEL140:II:3199613:3200901:-1 gene:ZC239.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3199611-3200900(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-48
Ensembl ZC239.9
Entrez Gene 191919 Entrez gene
SwissProt P91552 EMBL-EBI
WormBase CE15126 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37947 Serpentine receptor, class i protein 48 [Caenorhabditis elegans] ref|NP_494470.1| Serpentine Receptor, class I family member (sri-48) [Caenorhabditis elegans] 0.0
blast NP_494324 Guanylyl CYclase family member (gcy-21) [Caenorhabditis elegans] gb|AAB66169.1| Guanylyl cyclase protein 21 [Caenorhabditis elegans] 0.0
blast AAB37946 Guanylyl cyclase protein 15 [Caenorhabditis elegans] ref|NP_494468.1| Guanylyl CYclase family member (gcy-15) [Caenorhabditis elegans] 0.0
blast CAE72387 Hypothetical protein CBG19543 [Caenorhabditis briggsae] 0.0
blast NP_494323 Serpentine Receptor, class I family member (sri-47) [Caenorhabditis elegans] gb|AAB66170.2| Serpentine receptor, class i protein 47 [Caenorhabditis elegans] 1.0E-166
blast CAE72386 Hypothetical protein CBG19540 [Caenorhabditis briggsae] 6.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-80
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.4E-70
Pfam IPR000719 EMBL-EBI Protein kinase 3.6E-8
Pfam IPR000719 EMBL-EBI Protein kinase 6.2E-5
Pfam IPR001054 EMBL-EBI Guanylate cyclase 4.3E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494470.1 7 10-32,45-64,91-113,134-156,189-211,241-263,273-295
ZC239.9 7 10-32,45-64,91-113,134-156,189-211,241-263,273-295
GENEFINDER00000024303 16 10-32,45-64,91-113,134-156,189-211,241-263,273-295,363-385,395-413,420-439,444-463,484-506,539-561,596-618,623-645,1128-1150
Sequence
Target Sequence 
>C. ELEGANS:191097_AT
acactacctctcgtggctttgatatttatctcagttttacaaattggagtttcgaaggaa
aagtcgatagaattttctagaacgaattacccccaatacggtgttctgttctccaaaatc
tcgaatctgatgttcttcgattcaaatctctgggcagtcggagtcctttttatatctggt
tttggtggatgtttattgggagccatagtttccatgacgacgcttgatatgttcaaaatg
ctcggcgagttgcgacgaagagtctccttcaaaaattacgcacgccatcggtcagtggtg
agaagcctattggctcaatgtgcagctactgcgatccttttgcttccgggagccgcgatt
tttgcgatttttctgtatcctgatgagaaatcacgagaaatcagtcaaattatagtatgc
atatacgcgctccgttcgtctgcaagttctgtaattctagtaataactacaccaccatac
cgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTACCTCTCGTGGCTTTGATAT 305 111 430 Antisense
GAATTACCCCCAATACGGTGTTCTG 551 317 513 Antisense
TACGGTGTTCTGTTCTCCAAAATCT 675 643 526 Antisense
AAATCTCTGGGCAGTCGGAGTCCTT 231 113 573 Antisense
GAGCCATAGTTTCCATGACGACGCT 365 385 629 Antisense
GCGAGTTGCGACGAAGAGTCTCCTT 182 291 674 Antisense
CTCCTTCAAAAATTACGCACGCCAT 283 235 693 Antisense
GCACGCCATCGGTCAGTGGTGAGAA 594 315 709 Antisense
GCCTATTGGCTCAATGTGCAGCTAC 668 281 734 Antisense
ATAGTATGCATATACGCGCTCCGTT 63 23 841 Antisense
GTAATAACTACACCACCATACCGAA 441 461 889 Antisense
Sequence Source Affymetrix Proprietary Database