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[191096_at] 7TM chemoreceptor, srj family

Description F48G7.1 /REP_DB=WormBase Gene ID /WP=CE25893 /GEN=srj-37 /TR=Q9GUC0 /GB=AAG24131.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 43      4grp_total > 12      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 7.6
(-3)
A 		8.7
(-2.4)
A 		11.8
(-0.8)
A 		18.9
(3)
A 		11
B 9.4
(-0.3)
A 		10.1
(0.1)
A 		3.9
(-3)
A 		16
(3)
A 		12
C 32.2
(-1)
A 		16.5
(-2.2)
A 		4.7
(-3)
A 		89.1
(3)
A 		84
avr 16.4
(-1.3) 		11.8
(-2.1) 		6.8
(-3) 		41.3
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 14.7
(3)
A 		7.3
(-1.5)
A 		11.5
(1.1)
A 		4.8
(-3)
A 		11.7
(1.2)
A 		10.9
(0.7)
A 		10
B 28.2
(-0.7)
A 		4.1
(-3)
A 		67.9
(3)
A 		10
(-2.4)
A 		19.7
(-1.5)
A 		5.9
(-2.8)
A 		64
C 6.2
(-2.3)
A 		20.5
(3)
A 		8
(-1.7)
A 		4.4
(-3)
A 		6.4
(-2.3)
A 		7.7
(-1.8)
A 		16
avr 16.4
(-0.4) 		10.6
(-1.9) 		29.1
(3) 		6.4
(-3) 		12.6
(-1.4) 		8.2
(-2.5) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.7
(1)
A 		1.9
(-3)
A 		3.1
(3)
A 		2.8
(1.5)
A 		1
B 3
(2)
A 		2.5
(0.8)
A 		0.9
(-3)
A 		3.4
(3)
A 		3
C 10.7
(1.1)
A 		4.7
(-1.6)
A 		1.6
(-3)
A 		15
(3)
A 		13
avr 5.5
(1.2) 		3
(-1.7) 		1.9
(-3) 		7.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.7
(0.9)
A 		2.6
(0.7)
A 		2.5
(0.4)
A 		1.2
(-3)
A 		3.5
(3)
A 		2.7
(0.9)
A 		2
B 9.8
(0.3)
A 		1.4
(-3)
A 		16.5
(3)
A 		2.6
(-2.5)
A 		8
(-0.4)
A 		2.2
(-2.7)
A 		15
C 2.3
(-1.4)
A 		6.3
(3)
A 		2
(-1.8)
A 		0.9
(-3)
A 		2.1
(-1.7)
A 		2.6
(-1.1)
A 		5
avr 4.9
(0.7) 		3.4
(-1) 		7
(3) 		1.6
(-3) 		4.5
(0.2) 		2.5
(-2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14895
Sequence Type Exemplar sequence
Representative Public ID F48G7.1 NCBI
Target Description F48G7.1 /REP_DB=WormBase Gene ID /WP=CE25893 /GEN=srj-37 /TR=Q9GUC0 /GB=AAG24131.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070874(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070874 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-37) (srj-37) mRNA, complete cds. 11/11 None
SNAP00000037301 ENSEMBL cdna:SNAP chromosome:CEL140:V:638329:639757:1 11/11 None
GENEFINDER00000037313 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:636416:640251:1 11/11 None
F48G7.1 ENSEMBL cdna:known chromosome:CEL140:V:638457:639757:1 gene:F48G7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:638456-639757(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-37
Ensembl F48G7.1
Entrez Gene 178579 Entrez gene
SwissProt Q9GUC0 EMBL-EBI
WormBase CE25893 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24131 Serpentine receptor, class j protein 37 [Caenorhabditis elegans] ref|NP_503275.1| Serpentine Receptor, class J family member (srj-37) [Caenorhabditis elegans] 1.0E-169
blast T28747 hypothetical protein F48G7.1 - Caenorhabditis elegans 1.0E-163
blast AAG24131 Serpentine receptor, class j protein 37 [Caenorhabditis elegans] ref|NP_503275.1| Serpentine Receptor, class J family member (srj-37) [Caenorhabditis elegans] 1.0E-140
blast T28746 hypothetical protein F48G7.2 - Caenorhabditis elegans 1.0E-139
blast T28747 hypothetical protein F48G7.1 - Caenorhabditis elegans 1.0E-134
blast AAG24131 Serpentine receptor, class j protein 37 [Caenorhabditis elegans] ref|NP_503275.1| Serpentine Receptor, class J family member (srj-37) [Caenorhabditis elegans] 1.0E-130
blast T28747 hypothetical protein F48G7.1 - Caenorhabditis elegans 1.0E-124
blast CAE71084 Hypothetical protein CBG17933 [Caenorhabditis briggsae] 1.0E-122
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503275.1 7 15-32,44-66,91-113,134-156,201-223,247-269,284-306
F48G7.1 7 15-32,44-66,91-113,134-156,201-223,247-269,284-306
SNAP00000037301 5 35-57,78-100,145-167,191-213,228-250
GENEFINDER00000037313 6 274-296,321-343,364-386,431-453,477-499,527-549
Sequence
Target Sequence 
>C. ELEGANS:191096_AT
ttttgtagtgtggcacgcgtcttgcttctatcttggcggggccaatttggaaatcaagga
gtacatccgaacagatttccgagatttttatcgaatggactctatggatatgaacatgat
ctcttgcttatatagagaaggaacagaccacacactgttgcgatcttggtcgacgacgat
cctttggacatcaatttctgccatttccatttgcatgttcttgatgttggcgtgtatgat
aatgaaaaagctgaacaaaatgtcgtcatgcatgagcaagaaaacctcaacacttcagct
agaactcctccgagctctaataattcaaactgtgattccaatttttgtgagcttcttccc
atgtgtcataagcttcatcatcccaatatttgacttagatttgggaagaccaatcaacta
tgtggaggtcattgctctcggagcatttgcgttttgcgacccagtggctatagtcttgtg
tctcccagtttttcgacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGTAGTGTGGCACGCGTCTTGC 706 677 438 Antisense
CAGACCACACACTGTTGCGATCTTG 628 205 581 Antisense
TGGTCGACGACGATCCTTTGGACAT 495 551 604 Antisense
TTCTGCCATTTCCATTTGCATGTTC 614 693 633 Antisense
TCAACACTTCAGCTAGAACTCCTCC 33 629 724 Antisense
AACTCCTCCGAGCTCTAATAATTCA 451 141 740 Antisense
CCAATTTTTGTGAGCTTCTTCCCAT 309 277 775 Antisense
TGTCATAAGCTTCATCATCCCAATA 318 559 801 Antisense
TCGGAGCATTTGCGTTTTGCGACCC 355 607 875 Antisense
CAGTGGCTATAGTCTTGTGTCTCCC 119 209 899 Antisense
TTGTGTCTCCCAGTTTTTCGACAAC 356 709 913 Antisense
Sequence Source Affymetrix Proprietary Database