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[191095_at] Thrombospondin type 1 domain

Description R17.3 /REP_DB=WormBase Gene ID /WP=CE16316 /TR=O18003 /GB=CAB07269.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Thrombospondin type 1 domain
Cluster 6grp_total > 53      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 12.5
(-3)
A 		47.7
(-0.3)
A 		24.6
(-2.1)
A 		91.9
(3)
A 		79
B 19.1
(0.5)
A 		28
(3)
A 		19.7
(0.6)
A 		7
(-3)
A 		21
C 4
(-3)
A 		16.4
(2.4)
A 		17.8
(3)
A 		15.7
(2.1)
A 		14
avr 11.9
(-3) 		30.7
(1.3) 		20.7
(-1) 		38.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 12.8
(-2.1)
A 		30.8
(0)
A 		55.7
(3)
A 		8.8
(-2.6)
A 		5.4
(-3)
A 		6
(-2.9)
A 		50
B 26
(0.3)
A 		28.4
(0.8)
A 		17.4
(-1.5)
A 		9.9
(-3)
A 		39.4
(3)
A 		10.6
(-2.9)
A 		30
C 12.3
(-2)
A 		7
(-3)
A 		38.7
(3)
A 		18.2
(-0.9)
A 		17.2
(-1.1)
A 		30.5
(1.4)
A 		32
avr 17
(-1.9) 		22.1
(-0.6) 		37.3
(3) 		12.3
(-3) 		20.7
(-1) 		15.7
(-2.2) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.6
(-3)
A 		10.4
(1)
A 		6.4
(-1.8)
A 		13.4
(3)
A 		9
B 6.1
(2.1)
A 		6.9
(3)
A 		4.6
(0.4)
A 		1.5
(-3)
A 		5
C 1.3
(-3)
A 		4.7
(1.2)
A 		6.2
(3)
A 		2.6
(-1.4)
A 		5
avr 4
(-3) 		7.3
(3) 		5.7
(0.1) 		5.8
(0.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.4
(-2.5)
A 		11
(2.4)
A 		12.1
(3)
A 		2.2
(-2.6)
A 		1.6
(-2.9)
A 		1.5
(-3)
A 		11
B 9
(-0.1)
A 		9.4
(0)
A 		4.2
(-2.3)
A 		2.6
(-3)
A 		16
(3)
A 		4
(-2.4)
A 		13
C 4.6
(-1.1)
A 		2.1
(-3)
A 		9.9
(2.8)
A 		3.7
(-1.8)
A 		5.6
(-0.4)
A 		10.2
(3)
A 		8
avr 5.3
(-0.5) 		7.5
(1.8) 		8.7
(3) 		2.8
(-3) 		7.7
(2) 		5.2
(-0.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7503
Sequence Type Exemplar sequence
Representative Public ID R17.3 NCBI
Target Description R17.3 /REP_DB=WormBase Gene ID /WP=CE16316 /TR=O18003 /GB=CAB07269.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Thrombospondin type 1 domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066986 NCBI Caenorhabditis elegans R17.3 (R17.3) mRNA, complete cds. 11/11 None
SNAP00000033117 ENSEMBL cdna:SNAP chromosome:CEL140:III:10830942:10844509:1 11/11 None
GENEFINDER00000033122 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10834902:10839043:1 11/11 None
R17.3 ENSEMBL cdna:known chromosome:CEL140:III:10834891:10839053:1 gene:R17.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10834897-10839049(+) 100.0 100.0
Public Domain and Genome References
Gene Title Thrombospondin type 1 domain
Ensembl R17.3
Entrez Gene 176513 Entrez gene
SwissProt O18003 EMBL-EBI
WormBase CE16316 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07269 Hypothetical protein R17.3 [Caenorhabditis elegans] ref|NP_499387.1| R17.3 [Caenorhabditis elegans] 0.0
blast CAE71395 Hypothetical protein CBG18302 [Caenorhabditis briggsae] 0.0
blast CAE71395 Hypothetical protein CBG18302 [Caenorhabditis briggsae] 1.0E-178
blast AAK83466 RPE-spondin [Homo sapiens] 5.0E-24
blast AAK83466 RPE-spondin [Homo sapiens] 2.0E-23
Sequence
Target Sequence 
>C. ELEGANS:191095_AT
cggattacacgttcgtgtgcccaccaagagactgtgttctaaccgattgggacagctgga
cacaatgcactgcggacaacggaacctgcggtataggcacccaaaaacgcctacgccacg
tcatccaacacgcagaacgtggcggtgccgcctgtgaacccttaaaagaaatgcgaactt
gctttgtcgaatgccgacccaaaaaatctgcgcttgacgatataacgactgtggcattga
ttttggactacaggcacaataagacacgtagcaaaattaggcggaacaatatctactggg
atctaccaaatgtggcggaaaagatgaaaaaagccacgtactactgcgtacactacacaa
ttgactgggtcaaccgcaactgcgtctctcgtctcttaaacaaggggctttcagaaggaa
gtgtaatgtgcgccgagtgtcaaccagaagccacgtatcaccgaaataacgggcggtgtg
cgtcagatttggaggacggagatcagggattctggaagctcatcggtcctcaatcttgta
acgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGATTACACGTTCGTGTGCCCACC 248 243 710 Antisense
GTGCCCACCAAGAGACTGTGTTCTA 326 479 726 Antisense
AGCTGGACACAATGCACTGCGGACA 17 81 763 Antisense
TGCGGACAACGGAACCTGCGGTATA 592 581 780 Antisense
AACACGCAGAACGTGGCGGTGCCGC 618 125 836 Antisense
GCGAACTTGCTTTGTCGAATGCCGA 195 287 882 Antisense
AGCCACGTACTACTGCGTACACTAC 42 83 1041 Antisense
GTCTCTCGTCTCTTAAACAAGGGGC 314 471 1093 Antisense
TAATGTGCGCCGAGTGTCAACCAGA 15 635 1133 Antisense
CAACCAGAAGCCACGTATCACCGAA 660 185 1150 Antisense
TCATCGGTCCTCAATCTTGTAACGG 607 621 1229 Antisense
Sequence Source Affymetrix Proprietary Database