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[191094_at] UDP-glucuronysltransferase

Description T01G5.2 /REP_DB=WormBase Gene ID /WP=CE12976 /TR=O18009 /GB=CAB03266.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster 6grp_total > 81      4grp_total > 17      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 27.3
(-0.6)
A 		14.4
(-2.3)
A 		8.8
(-3)
A 		54.9
(3)
A 		46
B 52.2
(3)
A 		41.3
(-3)
A 		49.6
(1.6)
P 		50
(1.8)
A 		11
C 4.4
(-3)
A 		47.5
(3)
A 		42.5
(2.3)
A 		37.4
(1.6)
A 		43
avr 28
(-3) 		34.4
(-1) 		33.6
(-1.3) 		47.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 3.4
(-3)
A 		51.7
(3)
A 		48.3
(2.6)
A 		49.4
(2.7)
A 		43.6
(2)
P 		23.9
(-0.5)
A 		48
B 9.8
(-3)
A 		37.8
(-0.2)
A 		46.6
(0.7)
A 		44
(0.4)
A 		69.3
(3)
P 		25.4
(-1.4)
A 		60
C 51.5
(0.1)
A 		34.1
(-1.5)
A 		18.4
(-3)
A 		82.3
(3)
A 		41.5
(-0.8)
P 		29.6
(-1.9)
A 		64
avr 21.6
(-3) 		41.2
(0.2) 		37.8
(-0.4) 		58.6
(3) 		51.5
(1.8) 		26.3
(-2.2) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.9
(3)
A 		3.1
(-2.4)
A 		2.3
(-3)
A 		8
(1.5)
A 		8
B 16.7
(3)
A 		10.2
(-3)
A 		11.5
(-1.8)
P 		10.7
(-2.5)
A 		7
C 1.4
(-3)
A 		13.6
(2.5)
A 		14.8
(3)
A 		6.3
(-0.8)
A 		13
avr 9.3
(2) 		9
(0.5) 		9.5
(3) 		8.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.6
(-3)
A 		18.4
(3)
A 		10.5
(0.3)
A 		12.5
(1)
A 		13.2
(1.2)
P 		5.8
(-1.2)
A 		18
B 3.4
(-3)
A 		12.6
(-0.8)
A 		11.3
(-1.1)
A 		11.6
(-1)
A 		28.2
(3)
P 		9.5
(-1.5)
A 		25
C 19.1
(3)
A 		10.4
(-0.6)
A 		4.7
(-3)
A 		16.6
(2)
A 		13.4
(0.6)
P 		9.9
(-0.8)
A 		14
avr 7.7
(-3) 		13.8
(0.5) 		8.8
(-2.4) 		13.6
(0.3) 		18.3
(3) 		8.4
(-2.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12625
Sequence Type Exemplar sequence
Representative Public ID T01G5.2 NCBI
Target Description T01G5.2 /REP_DB=WormBase Gene ID /WP=CE12976 /TR=O18009 /GB=CAB03266.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074328 NCBI Caenorhabditis elegans T01G5.2 (UDP-glucuronysltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000029276 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15124433:15130099:-1 11/11 None
T01G5.2 ENSEMBL cdna:known chromosome:CEL140:V:15124433:15127774:-1 gene:T01G5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029272 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15124432-15127774(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronysltransferase
Gene Symbol ugt-30
Ensembl T01G5.2
Entrez Gene 187955 Entrez gene
SwissProt O18009 EMBL-EBI
WormBase CE12976 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03266 Hypothetical protein T01G5.2 [Caenorhabditis elegans] ref|NP_506729.1| T01G5.2 [Caenorhabditis elegans] 0.0
blast NP_503298 Y49C4A.8a [Caenorhabditis elegans] gb|AAK72318.1| Hypothetical protein Y49C4A.8a [Caenorhabditis elegans] 0.0
blast AAB42344 Udp-glucuronosyltransferase protein 28 [Caenorhabditis elegans] ref|NP_491437.1| C10H11.4 [Caenorhabditis elegans] 0.0
blast NP_503298 Y49C4A.8a [Caenorhabditis elegans] gb|AAK72318.1| Hypothetical protein Y49C4A.8a [Caenorhabditis elegans] 1.0E-180
blast AAB42344 Udp-glucuronosyltransferase protein 28 [Caenorhabditis elegans] ref|NP_491437.1| C10H11.4 [Caenorhabditis elegans] 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.1E-21
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.9E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506729.1 2 7-29,497-519
T01G5.2 2 7-29,497-519
GENEFINDER00000029276 8 7-29,44-66,87-106,126-148,201-223,247-269,281-303,756-778
Sequence
Target Sequence 
>C. ELEGANS:191094_AT
gaagctttcaaatcctttccaaatgtgactttcatctggaaatatgaatcagatgatcac
tcatttgcaaatggaattgacaatatatacttttcaaaatgggttccgcaaaatgaactt
cttaatgataaccgattaacagcatttctcagtcatggaggccttggatctattatggaa
ttggcgttcagtggaaaaccagcattaattattccggtttttgcggatcaaactcgaaat
gctaatacattggcaaggcacagaggagcaatatgtttgcataaatctcaaatgaaaaac
actgaagttttgaaaaaagcatttaaaagtgttttgttcgatgcctctttcaaaaataac
tcgctgaaactggcagcaaccttgaggaatcaaccaaacaaaccgaaagacacccttatt
aaatatacggaatttgttggagaatttggtccattcccacaaatggatccttatggtcgt
catttgaatgttttccaaaaatcttttattgatatttatacactaataatagttgtttcc
tccattttcgttgctctgatattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTTTCAAATCCTTTCCAAATG 530 335 994 Antisense
GATAACCGATTAACAGCATTTCTCA 474 423 1120 Antisense
GCATTTCTCAGTCATGGAGGCCTTG 261 307 1135 Antisense
GGAGGCCTTGGATCTATTATGGAAT 282 509 1150 Antisense
TTCCGGTTTTTGCGGATCAAACTCG 234 697 1205 Antisense
TGTTTTGTTCGATGCCTCTTTCAAA 60 561 1323 Antisense
GAAACTGGCAGCAACCTTGAGGAAT 1 359 1359 Antisense
GGAGAATTTGGTCCATTCCCACAAA 587 519 1432 Antisense
ATGGATCCTTATGGTCGTCATTTGA 445 51 1456 Antisense
CTAATAATAGTTGTTTCCTCCATTT 309 205 1516 Antisense
CTCCATTTTCGTTGCTCTGATATTC 449 235 1533 Antisense
Sequence Source Affymetrix Proprietary Database