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[191093_at] nuclear hormone receptor

Description Y32B12B.6 /REP_DB=WormBase Gene ID /WP=CE19066 /TR=Q9XX32 /GB=CAA21008.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster 6grp_total > 30      4grp_total > 18      6grp_cgc > 82      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6.7
(-3)
A 		11.1
(3)
A 		7.6
(-1.8)
A 		9
(0.1)
A 		4
B 6.9
(-3)
A 		8
(3)
A 		7.7
(1.4)
A 		7.4
(-0.3)
A 		1
C 5.4
(-2.9)
A 		7.4
(-2.5)
A 		5.1
(-3)
A 		30.3
(3)
A 		25
avr 6.3
(-3) 		8.8
(-1.4) 		6.8
(-2.7) 		15.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 6.2
(-0.6)
A 		5.8
(-0.9)
A 		4.9
(-1.6)
A 		3.1
(-3)
A 		7.1
(0.1)
A 		10.8
(3)
A 		8
B 6.2
(-2.5)
A 		27.1
(0.5)
A 		44.5
(3)
A 		18.5
(-0.7)
A 		3.6
(-2.8)
A 		2.4
(-3)
A 		42
C 8.1
(1.6)
A 		7.5
(0.9)
A 		4
(-3)
A 		9.4
(3)
A 		4.1
(-2.9)
A 		5.1
(-1.8)
A 		5
avr 6.8
(-2.1) 		13.5
(1) 		17.8
(3) 		10.3
(-0.5) 		4.9
(-3) 		6.1
(-2.4) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.4
(3)
A 		2.4
(3)
A 		2
(0.8)
A 		1.3
(-3)
A 		1
B 2.2
(3)
A 		2
(1)
A 		1.8
(-1)
A 		1.6
(-3)
A 		1
C 1.8
(-3)
A 		2.1
(-2.5)
A 		1.8
(-3)
A 		5.1
(3)
A 		3
avr 2.1
(-1.5) 		2.2
(-0.7) 		1.9
(-3) 		2.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.1
(-2)
A 		2
(1)
A 		1.1
(-2)
A 		0.8
(-3)
A 		2.1
(1.3)
A 		2.6
(3)
A 		2
B 2.2
(-2.2)
A 		9
(1.9)
A 		10.8
(3)
A 		4.9
(-0.6)
A 		1.5
(-2.6)
A 		0.9
(-3)
A 		10
C 3
(3)
A 		2.3
(0.9)
A 		1
(-3)
A 		1.9
(-0.3)
A 		1.3
(-2.1)
A 		1.7
(-0.9)
A 		2
avr 2.1
(-1.9) 		4.4
(3) 		4.3
(2.8) 		2.5
(-1.1) 		1.6
(-3) 		1.7
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12588
Sequence Type Exemplar sequence
Representative Public ID Y32B12B.6 NCBI
Target Description Y32B12B.6 /REP_DB=WormBase Gene ID /WP=CE19066 /TR=Q9XX32 /GB=CAA21008.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074790 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-122) (tag-122) mRNA, complete cds. 11/11 None
SNAP00000012873 ENSEMBL cdna:SNAP chromosome:CEL140:V:16567750:16572753:-1 10/11 None
Y32B12B.6 ENSEMBL cdna:known chromosome:CEL140:V:16572064:16573922:-1 gene:Y32B12B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16572063-16573922(-) 100.0 100.0
Public Domain and Genome References
Gene Title nuclear hormone receptor
Gene Symbol nhr-233
Ensembl Y32B12B.6
Entrez Gene 189569 Entrez gene
SwissProt Q9XX32 EMBL-EBI
WormBase CE19066 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21008 Hypothetical protein Y32B12B.6 [Caenorhabditis elegans] ref|NP_507191.1| Temporarily Assigned Gene name family member (tag-122) [Caenorhabditis elegans] 0.0
blast CAA21008 Hypothetical protein Y32B12B.6 [Caenorhabditis elegans] ref|NP_507191.1| Temporarily Assigned Gene name family member (tag-122) [Caenorhabditis elegans] 1.0E-109
blast CAE61069 Hypothetical protein CBG04819 [Caenorhabditis briggsae] 4.0E-70
blast CAE65525 Hypothetical protein CBG10500 [Caenorhabditis briggsae] 8.0E-69
blast CAE65525 Hypothetical protein CBG10500 [Caenorhabditis briggsae] 5.0E-41
blast CAE61069 Hypothetical protein CBG04819 [Caenorhabditis briggsae] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 5.6E-45
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.5E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000012873 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:191093_AT
tacttcatgaaacagttccccttcgtatattttgcaagactccaagaccggatagcgata
attcgggaaacttttctgaaagtagcactgttctctgcatcatttcgagcttatgcgctt
ggcaaagaagttatatcatttcctgatggaagttcaatttttccgagtaaagaaactgaa
agaatcgtgaaggatctgaacatgccagagcttataactgggcggcttataagtaaaatg
agagagcttcaaatcgcaaacgaagaatttctcctagttttggtgatattgttttgcaat
cctgcaatcaccaatctatctgacactggacggcgtcttctttccacttatcaaaatttc
tacagctcatcgttattcaaaatatgttcaatgaataacagtgggcacgtacgattcatg
gagctcttatctttaacaaatcttgctgaaacagctgttaaagatgttaatcaatatttt
gtactacttcaattgagcagccctgcttttaaagtgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTCATGAAACAGTTCCCCTTCG 214 213 478 Antisense
GTTCCCCTTCGTATATTTTGCAAGA 46 439 492 Antisense
GCAAGACTCCAAGACCGGATAGCGA 669 319 511 Antisense
CACTGTTCTCTGCATCATTTCGAGC 231 199 563 Antisense
CATTTCGAGCTTATGCGCTTGGCAA 357 215 578 Antisense
TGCAATCCTGCAATCACCAATCTAT 214 577 772 Antisense
CTGACACTGGACGGCGTCTTCTTTC 146 239 797 Antisense
CGTCTTCTTTCCACTTATCAAAATT 351 245 811 Antisense
GGCACGTACGATTCATGGAGCTCTT 637 535 881 Antisense
ACTACTTCAATTGAGCAGCCCTGCT 460 101 960 Antisense
GAGCAGCCCTGCTTTTAAAGTGTGT 82 389 972 Antisense
Sequence Source Affymetrix Proprietary Database