[Home] | [Total List]

[191092_at] G-protein coupled receptor

Description ZC412.1 /REP_DB=WormBase Gene ID /WP=CE15211 /TR=Q23305 /GB=CAB01528.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 10      4grp_total > 38      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 102.1
(3)
A 		76.2
(1.3)
A 		11.2
(-3)
A 		17.6
(-2.6)
A 		91
B 52.7
(0.1)
A 		15.5
(-3)
A 		39.5
(-1)
A 		87.2
(3)
A 		72
C 67.4
(3)
A 		48.7
(-0.1)
A 		31.2
(-3)
A 		39
(-1.7)
A 		36
avr 74.1
(3) 		46.8
(-0.5) 		27.3
(-3) 		47.9
(-0.4) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 17.6
(-3)
A 		70.7
(3)
A 		41.4
(-0.3)
A 		44
(-0)
A 		60.7
(1.9)
A 		48.4
(0.5)
A 		53
B 73.9
(3)
A 		48.1
(-0.6)
A 		52.8
(0)
A 		62
(1.3)
A 		31.4
(-3)
A 		54.9
(0.3)
A 		43
C 29.9
(-1.8)
A 		71.6
(2.3)
A 		49.3
(0.1)
A 		79
(3)
A 		17.9
(-3)
A 		55.8
(0.7)
A 		61
avr 40.5
(-2.1) 		63.5
(3) 		47.8
(-0.5) 		61.7
(2.6) 		36.7
(-3) 		53
(0.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 37.2
(3)
A 		16.5
(-0.6)
A 		2.9
(-2.9)
A 		2.6
(-3)
A 		35
B 16.8
(2.3)
A 		3.8
(-3)
A 		9.1
(-0.9)
A 		18.6
(3)
A 		15
C 22.3
(3)
A 		14
(-0.2)
A 		10.9
(-1.4)
A 		6.6
(-3)
A 		16
avr 25.4
(3) 		11.4
(-1.7) 		7.6
(-3) 		9.3
(-2.4) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.3
(-3)
A 		25.1
(3)
A 		9
(-1.4)
A 		11.2
(-0.8)
A 		18.3
(1.1)
A 		11.8
(-0.7)
A 		22
B 25.7
(3)
A 		16
(-1.5)
A 		12.8
(-3)
A 		16.4
(-1.3)
A 		12.7
(-3)
A 		20.5
(0.6)
A 		13
C 11.1
(-1)
A 		21.8
(3)
A 		12.5
(-0.5)
A 		15.9
(0.8)
A 		5.8
(-3)
A 		18.7
(1.8)
A 		16
avr 13.4
(-1.8) 		21
(3) 		11.4
(-3) 		14.5
(-1.1) 		12.3
(-2.4) 		17
(0.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12610
Sequence Type Exemplar sequence
Representative Public ID ZC412.1 NCBI
Target Description ZC412.1 /REP_DB=WormBase Gene ID /WP=CE15211 /TR=Q23305 /GB=CAB01528.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074258(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074258 NCBI Caenorhabditis elegans ZC412.1 (ZC412.1) mRNA, complete cds. 9/11 None
SNAP00000018091 ENSEMBL cdna:SNAP chromosome:CEL140:V:14855606:14861154:-1 9/11 None
GENEFINDER00000018103 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14855606:14861154:-1 9/11 None
ZC412.1 ENSEMBL cdna:known chromosome:CEL140:V:14855434:14861154:-1 gene:ZC412.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14855429-14861154(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl ZC412.1
Entrez Gene 191160 Entrez gene
SwissProt Q23305 EMBL-EBI
WormBase CE35920 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOE430A:1422347_AT neuropeptide Y receptor Y6 mm
MOUSE430_2:1422347_AT neuropeptide Y receptor Y6 mm
MOUSE430A_2:1422347_AT neuropeptide Y receptor Y6 mm
MOE430B:1438086_AT neuropeptide Y receptor Y6 mm
MOUSE430_2:1438086_AT neuropeptide Y receptor Y6 mm
MU11KSUBB:MSA.3186.0_S_AT neuropeptide Y receptor Y6 mm
MG-U74AV2:99811_AT neuropeptide Y receptor Y6 mm
MG-U74CV2:168298_AT neuropeptide Y receptor Y6 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
4983 neuropeptide Y receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01528 Hypothetical protein ZC412.1 [Caenorhabditis elegans] ref|NP_506659.2| ZC412.1 [Caenorhabditis elegans] 0.0
blast CAE60827 Hypothetical protein CBG04535 [Caenorhabditis briggsae] 1.0E-107
blast CAE66367 Hypothetical protein CBG11625 [Caenorhabditis briggsae] 1.0E-100
blast CAE66367 Hypothetical protein CBG11625 [Caenorhabditis briggsae] 1.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.2E-43
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 7.4E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506659.2 7 33-55,62-84,94-116,145-162,199-221,253-275,301-323
ZC412.1 7 33-55,62-84,94-116,145-162,199-221,253-275,301-323
SNAP00000018091 5 22-44,99-116,153-175,207-229,255-277
GENEFINDER00000018103 7 33-55,62-84,94-116,145-162,199-221,253-275,301-323
Sequence
Target Sequence 
>C. ELEGANS:191092_AT
cgacatgacgtggctcaccaatgctcgccgtcatacaaacgtcggcgttctgtctcgctt
cacaccttctccatcagtttcagtggtttacagacgaactctggagcgacatctaggtgt
caatcatttccgccgtggcacacttgcggacccgacatgcacttcacgtgaacgaagtct
tccgcgagaacttcaatcaaattgtttccttcttgttccgcttatgccattatgtcaatc
tgtgacgaggaagaatagtcatctagcaatcaatcgagacggctggaaatttctcgtaga
ttttccaaaaaagcaagccgaacatcttaaacaagattgtgctggaacattttcaaactt
gtggctctttactgatcgtcattccacaagccaatggctcaagtcgtcggccgagcagcg
tgaataccaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACATGACGTGGCTCACCAATGCT 656 251 1008 Antisense
ATGCTCGCCGTCATACAAACGTCGG 296 37 1028 Antisense
CACCTTCTCCATCAGTTTCAGTGGT 565 201 1070 Antisense
CGAACTCTGGAGCGACATCTAGGTG 91 253 1102 Antisense
CATCTAGGTGTCAATCATTTCCGCC 383 213 1117 Antisense
CCCGACATGCACTTCACGTGAACGA 429 261 1158 Antisense
ATCAAATTGTTTCCTTCTTGTTCCG 568 25 1203 Antisense
TCTTGTTCCGCTTATGCCATTATGT 114 619 1218 Antisense
CAAACTTGTGGCTCTTTACTGATCG 435 191 1361 Antisense
TTACTGATCGTCATTCCACAAGCCA 658 681 1376 Antisense
GGCCGAGCAGCGTGAATACCAATTC 370 541 1416 Antisense
Sequence Source Affymetrix Proprietary Database