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[191091_at] histidine acid phosphatase

Description T21B6.2 /REP_DB=WormBase Gene ID /WP=CE03680 /TR=Q22630 /GB=CAA92013.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=histidine acid phosphatase
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 08      4grp_total > 37      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 173.9
(3)
P 		141.4
(-3)
P 		145.4
(-2.3)
P 		154.1
(-0.7)
P 		33
B 146.1
(0.8)
P 		140.2
(0.2)
P 		108.3
(-3)
P 		168.7
(3)
P 		60
C 215.7
(3)
P 		213.6
(2.8)
P 		160
(-2.6)
P 		155.9
(-3)
P 		60
avr 178.6
(3) 		165.1
(1) 		137.9
(-3) 		159.6
(0.2) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 229.6
(3)
P 		144
(-1.9)
P 		182.9
(0.3)
P 		153.7
(-1.4)
P 		148.8
(-1.6)
P 		125.3
(-3)
P 		104
B 286.1
(3)
P 		171.1
(-1)
P 		246.9
(1.6)
P 		162
(-1.3)
P 		114.4
(-3)
P 		150.3
(-1.7)
P 		172
C 198.9
(1.9)
P 		179.1
(0.1)
P 		149.2
(-2.6)
P 		182.9
(0.5)
P 		145
(-3)
P 		210.4
(3)
P 		65
avr 238.2
(3) 		164.7
(-1.3) 		193
(0.3) 		166.2
(-1.2) 		136.1
(-3) 		162
(-1.5) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 63.3
(3)
P 		30.7
(-1.8)
P 		38
(-0.7)
P 		22.6
(-3)
P 		41
B 46.6
(3)
P 		34.6
(-0.3)
P 		25.1
(-3)
P 		36
(0)
P 		22
C 71.4
(3)
P 		61.4
(1.7)
P 		55.8
(0.9)
P 		26.3
(-3)
P 		45
avr 60.4
(3) 		42.2
(-0.4) 		39.6
(-0.9) 		28.3
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 42.3
(0.4)
P 		51.2
(3)
P 		39.8
(-0.3)
P 		39
(-0.5)
P 		44.9
(1.2)
P 		30.5
(-3)
P 		21
B 99.5
(3)
P 		56.9
(-1.5)
P 		60
(-1.2)
P 		42.9
(-3)
P 		46.5
(-2.6)
P 		56
(-1.6)
P 		57
C 73.7
(3)
P 		54.6
(-0.1)
P 		38
(-2.8)
P 		36.8
(-3)
P 		46.9
(-1.4)
P 		70.4
(2.5)
P 		37
avr 71.8
(3) 		54.2
(-0.3) 		45.9
(-1.8) 		39.6
(-3) 		46.1
(-1.8) 		52.3
(-0.6) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16012
Sequence Type Exemplar sequence
Representative Public ID T21B6.2 NCBI
Target Description T21B6.2 /REP_DB=WormBase Gene ID /WP=CE03680 /TR=Q22630 /GB=CAA92013.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=histidine acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077427(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077427 NCBI Caenorhabditis elegans T21B6.2 (T21B6.2) mRNA, complete cds. 11/11 None
SNAP00000041153 ENSEMBL cdna:SNAP chromosome:CEL140:X:10938264:10941276:-1 11/11 None
GENEFINDER00000041158 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10938347:10941276:-1 11/11 None
T21B6.2 ENSEMBL cdna:known chromosome:CEL140:X:10938137:10941276:-1 gene:T21B6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10938346-10941276(-) 100.0 100.0
Public Domain and Genome References
Gene Title histidine acid phosphatase
Ensembl T21B6.2
Entrez Gene 188683 Entrez gene
SwissProt Q22630 EMBL-EBI
WormBase CE31620 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92013 Hypothetical protein T21B6.2 [Caenorhabditis elegans] ref|NP_509828.2| T21B6.2 [Caenorhabditis elegans] 0.0
blast CAE70792 Hypothetical protein CBG17548 [Caenorhabditis briggsae] 0.0
blast CAE70792 Hypothetical protein CBG17548 [Caenorhabditis briggsae] 1.0E-179
blast AAB37044 Hypothetical protein F52E1.8 [Caenorhabditis elegans] ref|NP_505167.1| F52E1.8 [Caenorhabditis elegans] 1.0E-85
blast AAB37044 Hypothetical protein F52E1.8 [Caenorhabditis elegans] ref|NP_505167.1| F52E1.8 [Caenorhabditis elegans] 2.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 1.4E-17
Sequence
Target Sequence 
>C. ELEGANS:191091_AT
ttcaaatcacacttctcatcaaacaaaatacggaaatatcaaagatgtttacaatcacta
caatgggcttccttttcctaactggatagatgaaaaagtaaatggaaagagccttctcga
taccattgcagaaataagaagaatcgcgagattacagttgtttaatagcagagcaaaagc
aaagttcatggcgggctacctcatcaacagttggactgaaagcttggtgttagcttcgca
acatatcagcccaaaaaaagcgttactatattcgtcgcacgacggaacattatctgctct
catgtatggattgggaatcagtaatcatcaattgattccatatactgcttgtattatgat
tgagttgcacacaggaaataatgtaaagatatactttcgcaacacgacaacagaaaaccc
agatgacgtgcacgaaatgtttgttccaggatgttcgactgattgtcatctttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAATCACACTTCTCATCAAACA 637 685 540 Antisense
ACAATCACTACAATGGGCTTCCTTT 191 115 590 Antisense
GGCTTCCTTTTCCTAACTGGATAGA 587 535 605 Antisense
AAAGAGCCTTCTCGATACCATTGCA 390 123 645 Antisense
AGCAAAGTTCATGGCGGGCTACCTC 292 77 717 Antisense
GGCTACCTCATCAACAGTTGGACTG 600 537 733 Antisense
GTTAGCTTCGCAACATATCAGCCCA 615 445 768 Antisense
GCGTTACTATATTCGTCGCACGACG 164 291 799 Antisense
ACGACGGAACATTATCTGCTCTCAT 418 93 818 Antisense
GACGTGCACGAAATGTTTGTTCCAG 122 377 964 Antisense
GTTCGACTGATTGTCATCTTTCCAA 208 443 992 Antisense
Sequence Source Affymetrix Proprietary Database