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[191088_at] BZIP transcription factor

Description F29G9.4 /REP_DB=WormBase Gene ID /WP=CE27375 /TR=O16367 /GB=AAB65905.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=BZIP transcription factor
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 10      6grp_total > 27      4grp_total > 07      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 644
1 2 3 4 range
A 1828
(3)
P 		1670.1
(-3)
P 		1803.3
(2.1)
P 		1806.3
(2.2)
P 		158
B 1728.9
(-1.5)
P 		1618.4
(-3)
P 		1641.2
(-2.7)
P 		2063.8
(3)
P 		445
C 1979.2
(3)
P 		1419.8
(-3)
P 		1668.1
(-0.3)
P 		1614.7
(-0.9)
P 		559
avr 1845.4
(3) 		1569.4
(-3) 		1704.2
(-0.1) 		1828.3
(2.6) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1002
1 2 3 4 5 6 range
A 1633.7
(3)
P 		1612
(2.8)
P 		861.3
(-3)
P 		952.6
(-2.3)
P 		1056.6
(-1.5)
P 		1507.5
(2)
P 		772
B 1571.4
(3)
P 		1377.5
(0.8)
P 		1100.7
(-2.3)
P 		1074.9
(-2.6)
P 		1035.3
(-3)
P 		1204.5
(-1.1)
P 		536
C 1863.1
(3)
P 		1258.9
(-1)
P 		1168.2
(-1.6)
P 		965.8
(-3)
P 		1118.8
(-2)
P 		1140.3
(-1.8)
P 		897
avr 1689.4
(3) 		1416.1
(0.6) 		1043.4
(-2.6) 		997.8
(-3) 		1070.2
(-2.4) 		1284.1
(-0.5) 		692
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 665.6
(3)
P 		362.5
(-1.5)
P 		471.4
(0.1)
P 		264.4
(-3)
P 		401
B 551.3
(3)
P 		399.7
(-2.3)
P 		380.3
(-3)
P 		439.8
(-0.9)
P 		171
C 655.2
(3)
P 		408.2
(-0.9)
P 		581.4
(1.8)
P 		272.3
(-3)
P 		383
avr 624
(3) 		390.1
(-1.7) 		477.7
(0.1) 		325.5
(-3) 		299

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 301.2
(-1.2)
P 		573.3
(3)
P 		187.6
(-3)
P 		241.6
(-2.2)
P 		318.8
(-1)
P 		367
(-0.2)
P 		386
B 546.8
(3)
P 		458.5
(1.1)
P 		267.3
(-3)
P 		284.7
(-2.6)
P 		420.6
(0.3)
P 		449.1
(0.9)
P 		280
C 690.6
(3)
P 		384.1
(-0.7)
P 		297.3
(-1.8)
P 		194.2
(-3)
P 		362
(-1)
P 		381.7
(-0.7)
P 		496
avr 512.9
(3) 		472
(2.1) 		250.7
(-2.8) 		240.2
(-3) 		367.1
(-0.2) 		399.3
(0.5) 		273
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12269
Sequence Type Exemplar sequence
Representative Public ID F29G9.4 NCBI
Target Description F29G9.4 /REP_DB=WormBase Gene ID /WP=CE27375 /TR=O16367 /GB=AAB65905.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=BZIP transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072156(11), AY835432(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072156 NCBI Caenorhabditis elegans F29G9.4 (F29G9.4) mRNA, complete cds. 11/11 None
AY835432 NCBI Caenorhabditis elegans bZIP transcription factor FOS-1a (fos-1) mRNA, complete cds. 11/11 None
SNAP00000000270 ENSEMBL cdna:SNAP chromosome:CEL140:V:6016110:6018285:1 11/11 None
GENEFINDER00000000281 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6013498:6018285:1 11/11 None
F29G9.4 ENSEMBL cdna:known chromosome:CEL140:V:6006224:6018600:1 gene:F29G9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6016109-6018285(+) 100.0 100.0
Public Domain and Genome References
Gene Title BZIP transcription factor
Ensembl F29G9.4
Entrez Gene 178987 Entrez gene
SwissProt O16367 EMBL-EBI
WormBase CE27375 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast ABA54419 Abnormal eversion of vulva protein 5, isoform b [Caenorhabditis elegans] gb|AAX37359.1| bZIP transcription factor FOS-1a [Caenorhabditis elegans] 0.0
blast ABA54419 Abnormal eversion of vulva protein 5, isoform b [Caenorhabditis elegans] gb|AAX37359.1| bZIP transcription factor FOS-1a [Caenorhabditis elegans] 1.0E-180
blast AAB65905 Abnormal eversion of vulva protein 5, isoform a [Caenorhabditis elegans] ref|NP_504557.1| F29G9.4 [Caenorhabditis elegans] gb|AAX37360.1| bZIP transcription factor FOS-1b [Caenorhabditis elegans] 1.0E-148
blast ABA54419 Abnormal eversion of vulva protein 5, isoform b [Caenorhabditis elegans] gb|AAX37359.1| bZIP transcription factor FOS-1a [Caenorhabditis elegans] 1.0E-148
blast AAB65905 Abnormal eversion of vulva protein 5, isoform a [Caenorhabditis elegans] ref|NP_504557.1| F29G9.4 [Caenorhabditis elegans] gb|AAX37360.1| bZIP transcription factor FOS-1b [Caenorhabditis elegans] 1.0E-145
blast ABA54419 Abnormal eversion of vulva protein 5, isoform b [Caenorhabditis elegans] gb|AAX37359.1| bZIP transcription factor FOS-1a [Caenorhabditis elegans] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 2.2E-11
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 2.2E-11
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 2.2E-11
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 2.2E-11
Sequence
Target Sequence 
>C. ELEGANS:191088_AT
tcgttgagagttcatccaccacgtgctgactctgtaccatattctattcgatcaggacat
tcatcttcatcgtctgaacaacactcaccagttgaggactataagccttcaattgatcaa
ttacttcttcctccaatctcatgtattcaaaatatcaaagatcgaaatatcaattctatg
ccaccaccagctttaccggcaagcacgagtgctgctggaattcatgttatcacttctatc
ccggtttcgcatgccaactcattacacggtcgttcggaaaacgttttcgcagaaccggaa
cgcaaaattccaaaaatcgagttggaccaaacactgacatcattgaccatgccagacgac
gttgaacgtccgtcagctcttccgacgctttccagaatcgttgaaaatcagccgatcact
actcccagcaggcctttccgtctcgggggggaatatcaaaatcaaacaccgcagagtaca
gggaatggactattcggaggcccaccaggcccattcgacttgctttcctccaacactggt
ctgacaccttctggtcagccaacaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTGAGAGTTCATCCACCACGTG 7 603 316 Antisense
GCTGACTCTGTACCATATTCTATTC 35 297 340 Antisense
CAGGACATTCATCTTCATCGTCTGA 165 209 368 Antisense
CTTCCTCCAATCTCATGTATTCAAA 523 219 442 Antisense
GAAATATCAATTCTATGCCACCACC 214 363 479 Antisense
AATTCATGTTATCACTTCTATCCCG 272 177 534 Antisense
CCAACTCATTACACGGTCGTTCGGA 575 271 569 Antisense
TTGACCATGCCAGACGACGTTGAAC 616 699 658 Antisense
TTCCGACGCTTTCCAGAATCGTTGA 558 693 695 Antisense
TGAAAATCAGCCGATCACTACTCCC 428 573 717 Antisense
ACACCTTCTGGTCAGCCAACAATGA 12 111 859 Antisense
Sequence Source Affymetrix Proprietary Database