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[191087_at] Human NOF1 protein like

Description R11D1.9 /REP_DB=WormBase Gene ID /WP=CE06314 /TR=SW:Q21939 /GB=CAA99906.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human NOF1 protein like
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 32      6grp_total > 23      4grp_total > 58      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 868
1 2 3 4 range
A 1222.9
(-2.2)
P 		1940
(3)
P 		1713.2
(1.4)
P 		1111.3
(-3)
P 		829
B 1314.3
(-0.7)
P 		1634.1
(2.2)
P 		1715.2
(3)
P 		1072.4
(-3)
P 		643
C 1319.5
(-0.9)
P 		1621.3
(2.2)
P 		1702.9
(3)
P 		1108.2
(-3)
P 		595
avr 1285.6
(-1.2) 		1731.8
(3) 		1710.4
(2.8) 		1097.3
(-3) 		635

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 609
1 2 3 4 5 6 range
A 1502.9
(3)
P 		1279.8
(0.6)
P 		1420
(2.1)
P 		1217.9
(-0.1)
P 		954.3
(-3)
P 		1191.3
(-0.4)
P 		549
B 1290.1
(3)
P 		1257.7
(2.5)
P 		1187.7
(1.5)
P 		1182.6
(1.4)
P 		1012.2
(-1.2)
P 		893.7
(-3)
P 		396
C 1248.7
(2.3)
P 		1270.6
(2.7)
P 		1289.3
(3)
P 		1263.8
(2.6)
P 		930.4
(-3)
P 		987.4
(-2)
P 		359
avr 1347.2
(3) 		1269.4
(1.8) 		1299
(2.2) 		1221.4
(1) 		965.6
(-3) 		1024.1
(-2.1) 		382
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 445.3
(2.9)
P 		421.1
(2.4)
P 		447.9
(3)
P 		162.7
(-3)
P 		285
B 419.1
(3)
P 		403.6
(2.5)
P 		397.4
(2.3)
P 		228.5
(-3)
P 		191
C 436.8
(0.7)
P 		466.1
(1.1)
P 		593.5
(3)
P 		186.9
(-3)
P 		407
avr 433.7
(2) 		430.3
(2) 		479.6
(3) 		192.7
(-3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 277.1
(-3)
P 		455.2
(3)
P 		309.2
(-1.9)
P 		308.9
(-1.9)
P 		288
(-2.6)
P 		290
(-2.6)
P 		178
B 448.9
(3)
P 		418.6
(1.9)
P 		288.4
(-3)
P 		313.2
(-2.1)
P 		411.2
(1.6)
P 		333.2
(-1.3)
P 		161
C 462.8
(3)
P 		387.7
(0.8)
P 		328.1
(-0.9)
P 		254.2
(-3)
P 		301.1
(-1.7)
P 		330.6
(-0.8)
P 		209
avr 396.3
(1.9) 		420.5
(3) 		308.6
(-2.2) 		292.1
(-3) 		333.4
(-1.1) 		317.9
(-1.8) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13759
Sequence Type Exemplar sequence
Representative Public ID R11D1.9 NCBI
Target Description R11D1.9 /REP_DB=WormBase Gene ID /WP=CE06314 /TR=SW:Q21939 /GB=CAA99906.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human NOF1 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073778 NCBI Caenorhabditis elegans R11D1.9 (R11D1.9) mRNA, complete cds. 11/11 None
SNAP00000040857 ENSEMBL cdna:SNAP chromosome:CEL140:V:12731221:12731918:1 11/11 None
GENEFINDER00000040870 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12731221:12731918:1 11/11 None
R11D1.9 ENSEMBL cdna:known chromosome:CEL140:V:12729985:12731918:1 gene:R11D1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12729984-12731918(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human NOF1 protein like
Ensembl R11D1.9
Entrez Gene 187809 Entrez gene
SwissProt Q21939 EMBL-EBI
WormBase CE06314 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99906 Hypothetical protein R11D1.9 [Caenorhabditis elegans] ref|NP_506179.1| R11D1.9 [Caenorhabditis elegans] sp|Q21939|RM49_CAEEL Probable mitochondrial 39S ribosomal protein L49 (L49mt) 1.0E-127
blast CAA99906 Hypothetical protein R11D1.9 [Caenorhabditis elegans] ref|NP_506179.1| R11D1.9 [Caenorhabditis elegans] sp|Q21939|RM49_CAEEL Probable mitochondrial 39S ribosomal protein L49 (L49mt) 1.0E-106
blast CAE63978 Hypothetical protein CBG08570 [Caenorhabditis briggsae] 5.0E-85
blast CAE63978 Hypothetical protein CBG08570 [Caenorhabditis briggsae] 7.0E-85
blast XP_797620 PREDICTED: similar to mitochondrial ribosomal protein L49 [Strongylocentrotus purpuratus] 2.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR007740 EMBL-EBI Mitochondrial large ribosomal subunit 6.7E-52
Pfam IPR007740 EMBL-EBI Mitochondrial large ribosomal subunit 6.7E-52
Sequence
Target Sequence 
>C. ELEGANS:191087_AT
ccctcgagcagtttccaggttgtctttttcaacaacttcagtcgaaaaagctgagaaact
ttgggaaaatccatggaaacatgctctccctgaaaagtccagaagtcttgcaacggtcga
agaagctcctatcgattggtcgtatgtggaaagattgatgccaatagaagtggtgccgaa
tgttcctgagcacgaaaagtatcctacaccaagcggatggacaccaccgacagaagcagc
caagacacatcaatactacattcgacgtcgtcatgaccatcttcttcctctttatttgga
acgaaaaagggatttactgaatgagaaaacgttggattttgattatgtcgagctagtaac
tatcagaaacgtcgacggagacatttttgcttgcgaaaatgatctccgctcctatcttga
agaacatcttggacattcgatcgccagtcacgtcgatgagttgaaaggtcgtatcaaaat
taaaggagctccacgtgttcttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCGAGCAGTTTCCAGGTTGTCT 79 259 150 Antisense
AACATGCTCTCCCTGAAAAGTCCAG 408 137 227 Antisense
GAAGAAGCTCCTATCGATTGGTCGT 596 339 268 Antisense
AAGTGGTGCCGAATGTTCCTGAGCA 202 159 317 Antisense
CCAAGCGGATGGACACCACCGACAG 21 277 358 Antisense
TCAATACTACATTCGACGTCGTCAT 473 633 399 Antisense
CGACGGAGACATTTTTGCTTGCGAA 623 249 522 Antisense
TGCGAAAATGATCTCCGCTCCTATC 463 583 541 Antisense
AGAACATCTTGGACATTCGATCGCC 466 73 570 Antisense
TTCGATCGCCAGTCACGTCGATGAG 287 695 585 Antisense
TAAAGGAGCTCCACGTGTTCTTATT 493 637 630 Antisense
Sequence Source Affymetrix Proprietary Database