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[191086_at] C2H2-type zinc fingers

Description B0310.2 /REP_DB=WormBase Gene ID /WP=CE03875 /TR=SW:Q10938 /GB=AAA81766.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc fingers
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 51      4grp_high_8_8 > 62      6grp_highest_nonorm > 71      6grp_total > 42      4grp_total > 57      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 258.2
(-0.2)
P 		326.9
(3)
P 		297.6
(1.6)
P 		198.8
(-3)
P 		128
B 269
(-1.2)
P 		372.6
(1)
P 		464
(3)
P 		186.5
(-3)
M 		278
C 277.8
(-0.1)
P 		339
(1.3)
P 		413.2
(3)
P 		152.6
(-3)
A 		261
avr 268.3
(-0.5) 		346.2
(1.7) 		391.6
(3) 		179.3
(-3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 229.8
(-1.2)
P 		308.7
(1.3)
P 		336.1
(2.1)
P 		259.3
(-0.3)
P 		363.5
(3)
P 		172.3
(-3)
P 		191
B 303.1
(0.8)
P 		270.3
(-0.2)
P 		379.2
(3)
P 		332.7
(1.6)
P 		291.8
(0.4)
P 		174.9
(-3)
P 		204
C 334.6
(3)
P 		259.2
(0.4)
P 		323.3
(2.6)
P 		302.1
(1.9)
P 		253.1
(0.2)
P 		162.2
(-3)
P 		172
avr 289.2
(1.1) 		279.4
(0.7) 		346.2
(3) 		298
(1.4) 		302.8
(1.5) 		169.8
(-3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 94
(3)
P 		71
(0.9)
P 		77.8
(1.5)
P 		29.1
(-3)
P 		65
B 85.8
(1.1)
P 		92
(1.6)
P 		107.5
(3)
P 		39.7
(-3)
M 		68
C 92
(0.4)
P 		97.5
(0.6)
P 		144
(3)
P 		25.7
(-3)
A 		118
avr 90.6
(1.5) 		86.8
(1.2) 		109.8
(3) 		31.5
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 42.4
(-3)
P 		109.8
(3)
P 		73.2
(-0.2)
P 		65.8
(-0.9)
P 		109.7
(3)
P 		41.9
(-3)
P 		68
B 105.5
(1.5)
P 		90
(-0.2)
P 		92.1
(0)
P 		88.1
(-0.4)
P 		118.6
(3)
P 		65.2
(-3)
P 		53
C 124
(3)
P 		79.1
(-0.9)
P 		82.3
(-0.6)
P 		60.8
(-2.4)
P 		81.9
(-0.6)
P 		54.3
(-3)
P 		70
avr 90.6
(1.5) 		93
(1.7) 		82.5
(0.5) 		71.6
(-0.8) 		103.4
(3) 		53.8
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18541
Sequence Type Exemplar sequence
Representative Public ID B0310.2 NCBI
Target Description B0310.2 /REP_DB=WormBase Gene ID /WP=CE03875 /TR=SW:Q10938 /GB=AAA81766.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc fingers
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075708 NCBI Caenorhabditis elegans B0310.2 (B0310.2) mRNA, complete cds. 11/11 None
GENEFINDER00000007909 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:502287:506934:-1 11/11 None
B0310.2.2 ENSEMBL cdna:known chromosome:CEL140:X:501966:506944:-1 gene:B0310.2 11/11 None
B0310.2.1 ENSEMBL cdna:known chromosome:CEL140:X:501966:506943:-1 gene:B0310.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007896 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:502286-506934(-) 100.0 100.0
Public Domain and Genome References
Gene Title C2H2-type zinc fingers
Ensembl B0310.2
Entrez Gene 180403 Entrez gene
SwissProt Q10938 EMBL-EBI
WormBase CE03875 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81766 Hypothetical protein B0310.2 [Caenorhabditis elegans] ref|NP_508109.1| B0310.2 [Caenorhabditis elegans] sp|Q10938|YWS2_CAEEL Hypothetical zinc finger protein B0310.2 in chromosome X 0.0
blast CAE63656 Hypothetical protein CBG08158 [Caenorhabditis briggsae] 1.0E-119
blast AAF52141 CG9768-PA [Drosophila melanogaster] gb|AAM29532.1| RE60512p [Drosophila melanogaster] ref|NP_524221.1| CG9768-PA [Drosophila melanogaster] 1.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.9E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.2E-5
Sequence
Target Sequence 
>C. ELEGANS:191086_AT
cacgccgccaactttatgaaaaccgtgccacaactgccagtttcaaatcacttcacagaa
tctgatgcagaagatataaaaattgacgtggaaagtgacgagggagagattgaagtgtca
ccatcaccatcaactggtgatatcactgaaaatgagtcgtcatcgtcttcaaccggacca
atgatatcaccgaactgtggagatggagactgtgccctggagaaaccgttcatatgcatg
cacaacaattgcggcaaacggttcgccaacaagttcctccttaaaaagcacatgttcatt
cataccggcctccgtccacacacatgtccacactgccacaaaaaattcaacaggaaagac
aacctgctacgtcataagaagacccattcaccgacgagtgctcatttggggccaattcta
cccaaaaaccccttccacgggattccacagcttccggtccttcataatattgccctcaca
caaggcttcagtcatttccatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGCCGCCAACTTTATGAAAACCG 574 199 700 Antisense
AACTGCCAGTTTCAAATCACTTCAC 542 141 731 Antisense
GATTGAAGTGTCACCATCACCATCA 82 435 807 Antisense
TCATCGTCTTCAACCGGACCAATGA 291 621 859 Antisense
AGACTGTGCCCTGGAGAAACCGTTC 143 71 906 Antisense
GAAACCGTTCATATGCATGCACAAC 218 359 921 Antisense
GCAAACGGTTCGCCAACAAGTTCCT 76 319 953 Antisense
AAGCACATGTTCATTCATACCGGCC 438 151 985 Antisense
GCTTCCGGTCCTTCATAATATTGCC 314 305 1149 Antisense
AATATTGCCCTCACACAAGGCTTCA 453 173 1165 Antisense
ACAAGGCTTCAGTCATTTCCATGCT 228 113 1179 Antisense
Sequence Source Affymetrix Proprietary Database