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[191085_at] 7TM chemoreceptor, sri family

Description K07E8.9 /REP_DB=WormBase Gene ID /WP=CE25939 /GEN=sri-45 /TR=O16690 /GB=AAB66154.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 52      4grp_total > 28      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 16.9
(-3)
A 		49.7
(3)
A 		32.7
(-0.1)
A 		48.7
(2.8)
A 		33
B 51.7
(3)
A 		41.1
(1.6)
A 		6.7
(-3)
A 		48.5
(2.6)
A 		45
C 67.9
(0.9)
M 		47.1
(-1.1)
A 		27
(-3)
A 		90.3
(3)
A 		63
avr 45.5
(0.5) 		46
(0.5) 		22.1
(-3) 		62.5
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 22.1
(-3)
A 		28.9
(-1.6)
A 		50.9
(3)
A 		37
(0.1)
A 		34.3
(-0.5)
A 		28
(-1.8)
A 		29
B 42
(0.5)
P 		13
(-2.4)
A 		66.3
(3)
A 		61
(2.5)
A 		22.4
(-1.4)
A 		7.1
(-3)
A 		59
C 37.8
(-0.4)
A 		55.8
(3)
A 		36.6
(-0.6)
A 		23.7
(-3)
A 		43.5
(0.7)
A 		33.3
(-1.2)
A 		32
avr 34
(-0.6) 		32.6
(-0.9) 		51.3
(3) 		40.6
(0.7) 		33.4
(-0.8) 		22.8
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 6.2
(-3)
A 		10.8
(3)
A 		8.5
(-0)
A 		7.1
(-1.8)
A 		5
B 16.5
(3)
A 		10.2
(0.5)
A 		1.6
(-3)
A 		10.3
(0.5)
A 		15
C 22.5
(3)
M 		13.5
(-1.1)
A 		9.4
(-3)
A 		15.2
(-0.3)
A 		13
avr 15.1
(3) 		11.5
(0.5) 		6.5
(-3) 		10.9
(0.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.1
(-3)
A 		10.3
(2.3)
A 		11.1
(3)
A 		9.4
(1.5)
A 		10.4
(2.4)
A 		6.8
(-0.7)
A 		7
B 14.6
(2.3)
P 		4.3
(-2.3)
A 		16.1
(3)
A 		16.2
(3)
A 		9.1
(-0.2)
A 		2.7
(-3)
A 		14
C 14
(1.5)
A 		17
(3)
A 		9.3
(-0.8)
A 		4.8
(-3)
A 		14.1
(1.6)
A 		11.2
(0.1)
A 		12
avr 10.9
(1.5) 		10.5
(1.1) 		12.2
(3) 		10.1
(0.6) 		11.2
(1.9) 		6.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4338
Sequence Type Exemplar sequence
Representative Public ID K07E8.9 NCBI
Target Description K07E8.9 /REP_DB=WormBase Gene ID /WP=CE25939 /GEN=sri-45 /TR=O16690 /GB=AAB66154.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061381(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061381 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-45) (sri-45) mRNA, complete cds. 10/11 None
K07E8.9 ENSEMBL cdna:known chromosome:CEL140:II:660097:661802:-1 gene:K07E8.9 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018453 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:660096-661802(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-45
Ensembl K07E8.9
Entrez Gene 191917 Entrez gene
SwissProt O16690 EMBL-EBI
WormBase CE33669 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66154 Serpentine receptor, class i protein 45 [Caenorhabditis elegans] ref|NP_493782.2| Serpentine Receptor, class I family member (sri-45) [Caenorhabditis elegans] 0.0
blast AAB66147 Serpentine receptor, class i protein 46 [Caenorhabditis elegans] ref|NP_493785.1| Serpentine Receptor, class I family member (sri-46) [Caenorhabditis elegans] 1.0E-129
blast AAC68720 Serpentine receptor, class i protein 42 [Caenorhabditis elegans] ref|NP_494457.1| Serpentine Receptor, class I family member (sri-42) [Caenorhabditis elegans] 8.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.7E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493782.2 7 27-49,62-81,86-108,145-167,204-226,259-281,296-318
K07E8.9 7 27-49,62-81,86-108,145-167,204-226,259-281,296-318
Sequence
Target Sequence 
>C. ELEGANS:191085_AT
gaacaaacatgttatcccggctaccgcgtttaagtgtctaatgatcacaggattctcctt
ttccccactcggatcattcttctggtaccatgctggaatagctgaagatctgctaccagg
ctttacatacccagaattcaaggctgaattctcaaaccttaagaatttcacaatacacca
actgaatatatacatgtttcttgtcggagtatgtgggtttctggggatctttggcgtgtt
ccaggtgattgctatgacaacagtggacactatgaaaatgttgaaaggagcgcggagaac
aatttcagcgcagagttataatcgtcaaaaatctgcgttaagaagtctgacagctcaatt
tttggcctccactttaatggttctacctgcatcttcattctttgttataatgacctaccc
gataaaatatggacaggatataataaacgtgtctatggcaatatttgctacccgatcttc
tgtgaacgcggtaatcttggtcgtgactacgcctccgtatagggcatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAAACATGTTATCCCGGCTACC 53 353 426 Antisense
GGCTACCGCGTTTAAGTGTCTAATG 101 539 444 Antisense
ATGATCACAGGATTCTCCTTTTCCC 319 47 466 Antisense
TCTGCTACCAGGCTTTACATACCCA 116 609 534 Antisense
GGAGTATGTGGGTTTCTGGGGATCT 676 517 631 Antisense
GGATCTTTGGCGTGTTCCAGGTGAT 139 509 650 Antisense
GGCCTCCACTTTAATGGTTCTACCT 125 543 789 Antisense
TACCTGCATCTTCATTCTTTGTTAT 697 649 809 Antisense
CTACCCGATCTTCTGTGAACGCGGT 78 227 893 Antisense
GTAATCTTGGTCGTGACTACGCCTC 40 463 916 Antisense
ACTACGCCTCCGTATAGGGCATTTT 149 101 931 Antisense
Sequence Source Affymetrix Proprietary Database