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[191084_at] Transthyretin-like family

Description T14G10.4 /REP_DB=WormBase Gene ID /WP=CE06450 /TR=Q22499 /GB=CAA93096.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 17      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 579
1 2 3 4 range
A 284.2
(-3)
P 		368.7
(-1.9)
P 		324.6
(-2.5)
P 		725.7
(3)
P 		442
B 274.3
(-3)
P 		494.7
(-0.5)
P 		470
(-0.8)
P 		797.4
(3)
P 		523
C 237.2
(-3)
P 		362.4
(-1.7)
P 		377.9
(-1.5)
P 		816.1
(3)
P 		579
avr 265.2
(-3) 		408.6
(-1.3) 		390.8
(-1.5) 		779.7
(3) 		515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 315
(-3)
P 		379.1
(-2.1)
P 		691.2
(2.4)
P 		729.9
(3)
P 		544.5
(0.3)
P 		524.9
(0)
P 		415
B 450.6
(-3)
P 		501.4
(-1.6)
P 		561.8
(0.2)
P 		662.1
(3)
P 		631.3
(2.1)
P 		557.3
(0)
P 		212
C 435.3
(-2.3)
P 		540.5
(-0.3)
P 		398.4
(-3)
P 		713.5
(3)
P 		617.5
(1.2)
P 		609.3
(1)
P 		315
avr 400.3
(-3) 		473.7
(-1.5) 		550.5
(-0) 		701.8
(3) 		597.8
(0.9) 		563.8
(0.3) 		302
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 103.5
(2.4)
P 		80
(-3)
P 		84.9
(-1.9)
P 		106.2
(3)
P 		26
B 87.5
(-3)
P 		122.2
(-0.5)
P 		108.9
(-1.4)
P 		169.9
(3)
P 		82
C 78.5
(-3)
P 		104.2
(-0.4)
P 		131.7
(2.4)
P 		137.6
(3)
P 		59
avr 89.8
(-3) 		102.1
(-1.5) 		108.5
(-0.7) 		137.9
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 58.1
(-3)
P 		134.8
(0.6)
P 		150.5
(1.4)
P 		185.1
(3)
P 		164.3
(2)
P 		127.8
(0.3)
P 		127
B 156.8
(-2)
P 		166.9
(-1.5)
P 		136.4
(-3)
P 		175.4
(-1.1)
P 		256.5
(3)
P 		207.8
(0.6)
P 		120
C 161.4
(0.5)
P 		164.9
(0.7)
P 		101.4
(-3)
P 		143.5
(-0.5)
P 		199.8
(2.8)
P 		204
(3)
P 		103
avr 125.4
(-3) 		155.5
(-0.8) 		129.4
(-2.7) 		168
(0.1) 		206.9
(3) 		179.9
(1) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10124
Sequence Type Exemplar sequence
Representative Public ID T14G10.4 NCBI
Target Description T14G10.4 /REP_DB=WormBase Gene ID /WP=CE06450 /TR=Q22499 /GB=CAA93096.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069454 NCBI Caenorhabditis elegans T14G10.4 (T14G10.4) mRNA, complete cds. 11/11 None
SNAP00000034621 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10156176:10156707:1 11/11 None
GENEFINDER00000034627 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10156176:10156707:1 11/11 None
T14G10.4 ENSEMBL cdna:known chromosome:CEL140:IV:10156176:10156707:1 gene:T14G10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10156181-10156713(+) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl T14G10.4
Entrez Gene 188506 Entrez gene
SwissProt Q22499 EMBL-EBI
WormBase CE06450 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93096 Hypothetical protein T14G10.4 [Caenorhabditis elegans] ref|NP_501855.1| T14G10.4 [Caenorhabditis elegans] 2.0E-67
blast CAE59921 Hypothetical protein CBG03407 [Caenorhabditis briggsae] 8.0E-57
blast CAA93097 Hypothetical protein T14G10.3 [Caenorhabditis elegans] ref|NP_501856.2| T14G10.3 [Caenorhabditis elegans] 3.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 5.1E-32
Sequence
Target Sequence 
>C. ELEGANS:191084_AT
gagcacctgtgacatttctaatcttgtgctcactggctcttctctgttcatcagctaaca
actgtgcctggtttgtcggtcaattacaatgtacggacacttcgaaattggaaaatgtgg
ttgtagaaatttgggacaaggatcgatctttttttccaattactttattcgttgatgatg
atttggctggaagaactattacttctgcagatgacaatggaacattcaaagtggaaggat
gtgcttctgacctcgattttctttttatcaaaaatgaaccagaattttatttgaaaattc
gacactactgcaaaggaaaggcagaagtgacgcttgtacacccgaaaaatccgaaggtgt
tcgttccacaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCACCTGTGACATTTCTAATCTT 401 387 17 Antisense
TTCTAATCTTGTGCTCACTGGCTCT 602 691 32 Antisense
CTCTTCTCTGTTCATCAGCTAACAA 513 229 53 Antisense
TCAGCTAACAACTGTGCCTGGTTTG 97 623 67 Antisense
GTGCCTGGTTTGTCGGTCAATTACA 228 471 80 Antisense
AATGTACGGACACTTCGAAATTGGA 342 155 104 Antisense
TGGGACAAGGATCGATCTTTTTTTC 310 553 148 Antisense
GAAAATTCGACACTACTGCAAAGGA 671 351 309 Antisense
GGCAGAAGTGACGCTTGTACACCCG 649 533 336 Antisense
TGACGCTTGTACACCCGAAAAATCC 526 473 344 Antisense
TCCGAAGGTGTTCGTTCCACAAACT 264 591 366 Antisense
Sequence Source Affymetrix Proprietary Database