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[191083_at] 7TM chemoreceptor, srm family

Description T28H11.3 /REP_DB=WormBase Gene ID /WP=CE26016 /GEN=srm-2 /TR=Q23059 /GB=AAB04601.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 30      4grp_total > 19      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 1.8
(-3)
A 		5.4
(-2.7)
A 		5.2
(-2.7)
A 		70.4
(3)
A 		69
B 6.6
(-3)
A 		64.1
(3)
A 		6.5
(-3)
A 		10.6
(-2.6)
A 		58
C 24
(-1.8)
A 		9.5
(-2.6)
A 		2.4
(-3)
A 		108.5
(3)
P 		106
avr 10.8
(-2.4) 		26.3
(-0.8) 		4.7
(-3) 		63.2
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 7.2
(-2.8)
A 		12.6
(-2.1)
A 		53.6
(3)
A 		21.1
(-1)
A 		5.4
(-3)
A 		5.7
(-3)
A 		48
B 5.7
(-2.5)
A 		31.8
(3)
A 		9.2
(-1.8)
A 		22.7
(1.1)
A 		3.5
(-3)
A 		5.2
(-2.6)
A 		28
C 16.7
(0.9)
A 		17.2
(1)
A 		3.5
(-3)
A 		8.1
(-1.6)
A 		23.9
(3)
A 		4.4
(-2.7)
A 		20
avr 9.9
(-1.3) 		20.5
(2.4) 		22.1
(3) 		17.3
(1.3) 		10.9
(-1) 		5.1
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 0.7
(-3)
A 		1.2
(-2.7)
A 		1.4
(-2.6)
A 		10.3
(3)
A 		10
B 2.1
(-2.7)
A 		15.8
(3)
A 		1.5
(-3)
A 		2.3
(-2.7)
A 		14
C 7.9
(-0.6)
A 		2.7
(-2.3)
A 		0.8
(-3)
A 		18.3
(3)
P 		18
avr 3.6
(-1.4) 		6.6
(0.6) 		1.2
(-3) 		10.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.3
(-3)
A 		4.5
(-1.2)
A 		11.7
(3)
A 		5.4
(-0.6)
A 		1.6
(-2.8)
A 		1.4
(-2.9)
A 		10
B 2
(-2.6)
A 		10.6
(3)
A 		2.2
(-2.5)
A 		6
(0)
A 		1.4
(-3)
A 		1.9
(-2.7)
A 		9
C 6.2
(1.7)
A 		5.3
(0.9)
A 		0.9
(-3)
A 		1.6
(-2.4)
A 		7.7
(3)
A 		1.5
(-2.5)
A 		7
avr 3.2
(-1.2) 		6.8
(3) 		4.9
(0.8) 		4.3
(0.1) 		3.6
(-0.7) 		1.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10838
Sequence Type Exemplar sequence
Representative Public ID T28H11.3 NCBI
Target Description T28H11.3 /REP_DB=WormBase Gene ID /WP=CE26016 /GEN=srm-2 /TR=Q23059 /GB=AAB04601.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068300 NCBI Caenorhabditis elegans Serpentine Receptor, class M family member (srm-2) (srm-2) mRNA, complete cds. 11/11 None
GENEFINDER00000000761 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5008668:5010779:1 9/11 None
T28H11.3 ENSEMBL cdna:known chromosome:CEL140:IV:5008668:5010779:1 gene:T28H11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000749 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5008673-5010785(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srm family
Gene Symbol srm-2
Ensembl T28H11.3
Entrez Gene 191956 Entrez gene
SwissProt Q23059 EMBL-EBI
WormBase CE26016 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04601 Serpentine receptor, class m protein 2 [Caenorhabditis elegans] ref|NP_500701.1| Serpentine Receptor, class M family member (srm-2) [Caenorhabditis elegans] 1.0E-143
blast AAB04601 Serpentine receptor, class m protein 2 [Caenorhabditis elegans] ref|NP_500701.1| Serpentine Receptor, class M family member (srm-2) [Caenorhabditis elegans] 1.0E-138
blast CAE72806 Hypothetical protein CBG20083 [Caenorhabditis briggsae] 1.0E-105
blast CAE72806 Hypothetical protein CBG20083 [Caenorhabditis briggsae] 1.0E-104
blast CAE72805 Hypothetical protein CBG20082 [Caenorhabditis briggsae] 5.0E-44
blast CAE72805 Hypothetical protein CBG20082 [Caenorhabditis briggsae] 2.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500701.1 7 20-37,54-76,91-113,134-156,198-220,265-287,297-315
T28H11.3 7 20-37,54-76,91-113,134-156,198-220,265-287,297-315
GENEFINDER00000000761 7 20-37,54-76,91-113,134-156,201-223,244-266,281-300
Sequence
Target Sequence 
>C. ELEGANS:191083_AT
ttttggaattcccactctcatacttgtctattttggatatacaccatctccggaagaagc
cacggaagccaagcaaattgtatattatttaaatggggagggtgatagtgcttttctcat
gatcactgctaaaagaggaggtactattgattggacatcaattatttgtacggtttacat
ctttgttattatgatttcttcgtcgattactgtatttatatgtgcaattaacatttataa
acaaatgaaaaagaagatgctgagcgatgctgcgaagaaatcccagcagcaaattaattt
gattctgcttcttcaggttgggtcaaccctagtttttttaaaatttaaccaaaaattgca
gttcttatttccatttcttcttatccatatcccgttttatgaatcgtttatatttccaat
ttttaatatcgaaaatccatttctagcaaataatttgccgtttttgttttcctggtgtcc
ggctatcaatccaattttggttatggtcatggttaagaatgtgcgtgatagattactatg
cagatcagccggctcgaaaatctcatcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGGAATTCCCACTCTCATACTT 437 677 444 Antisense
ATACACCATCTCCGGAAGAAGCCAC 556 21 482 Antisense
GTGCTTTTCTCATGATCACTGCTAA 697 479 551 Antisense
TATTATGATTTCTTCGTCGATTACT 598 661 630 Antisense
GAAGATGCTGAGCGATGCTGCGAAG 608 337 696 Antisense
GATTCTGCTTCTTCAGGTTGGGTCA 178 433 744 Antisense
TGCAGTTCTTATTTCCATTTCTTCT 3 579 800 Antisense
CTTCTTATCCATATCCCGTTTTATG 123 221 820 Antisense
GTCCGGCTATCAATCCAATTTTGGT 584 475 920 Antisense
TTACTATGCAGATCAGCCGGCTCGA 210 683 976 Antisense
AGCCGGCTCGAAAATCTCATCAAGT 530 83 990 Antisense
Sequence Source Affymetrix Proprietary Database