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[191079_s_at] Human HA0609 protein like

Description C15H11.9 /REP_DB=WormBase Gene ID /WP=CE08186 /TR=Q9XVT0 /GB=CAB02731.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human HA0609 protein like
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 85      6grp_total > 68      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3998
1 2 3 4 range
A 1011.8
(-2.7)
P 		862.8
(-3)
P 		864.1
(-3)
P 		4236.6
(3)
P 		3374
B 989.8
(-2.5)
P 		827.7
(-2.8)
P 		683.6
(-3)
P 		4681.3
(3)
P 		3998
C 1000
(-2.7)
P 		825.1
(-3)
P 		986.5
(-2.7)
P 		4183.8
(3)
P 		3359
avr 1000.5
(-2.7) 		838.5
(-3) 		844.7
(-3) 		4367.2
(3) 		3529

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 681
1 2 3 4 5 6 range
A 878.5
(2.2)
P 		652.8
(-3)
P 		761.8
(-0.5)
P 		721.5
(-1.4)
P 		770.7
(-0.3)
P 		912.6
(3)
P 		260
B 865.5
(-1.8)
P 		985
(-0.5)
P 		782.5
(-2.6)
P 		750.1
(-3)
P 		897.9
(-1.4)
P 		1304.5
(3)
P 		554
C 761
(-1.5)
P 		936.7
(0.4)
P 		656.7
(-2.6)
P 		624
(-3)
P 		727.2
(-1.9)
P 		1176.8
(3)
P 		553
avr 835
(-1.1) 		858.2
(-0.8) 		733.7
(-2.5) 		698.5
(-3) 		798.6
(-1.6) 		1131.3
(3) 		433
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 839
1 2 3 4 range
A 368.4
(-0.5)
P 		187.3
(-3)
P 		225.9
(-2.5)
P 		620.2
(3)
P 		433
B 315.6
(-1.9)
P 		204.4
(-2.7)
P 		158.4
(-3)
P 		997.6
(3)
P 		839
C 331
(-1.8)
P 		237.2
(-3)
P 		343.8
(-1.6)
P 		705.5
(3)
P 		468
avr 338.3
(-1.6) 		209.6
(-3) 		242.7
(-2.6) 		774.4
(3) 		565

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 162
(-3)
P 		232.2
(3)
P 		165.9
(-2.7)
P 		183
(-1.2)
P 		232.6
(3)
P 		222.2
(2.1)
P 		71
B 301.2
(-0.7)
P 		327.9
(-0.2)
P 		190
(-3)
P 		198.7
(-2.8)
P 		364.8
(0.5)
P 		486.5
(3)
P 		297
C 282.1
(0.5)
P 		285.8
(0.6)
P 		167.1
(-2.1)
P 		125.5
(-3)
P 		235.3
(-0.5)
P 		394
(3)
P 		269
avr 248.4
(-0.6) 		282
(0.4) 		174.3
(-2.8) 		169.1
(-3) 		277.6
(0.3) 		367.6
(3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191079_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14186
Sequence Type Exemplar sequence
Representative Public ID C15H11.9 NCBI
Target Description C15H11.9 /REP_DB=WormBase Gene ID /WP=CE08186 /TR=Q9XVT0 /GB=CAB02731.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human HA0609 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074172 NCBI Caenorhabditis elegans C15H11.9 (C15H11.9) mRNA, complete cds. 11/11 None
SNAP00000026582 ENSEMBL cdna:SNAP chromosome:CEL140:V:14426484:14427592:-1 11/11 None
GENEFINDER00000026587 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14426484:14427592:-1 11/11 None
C15H11.9.1 ENSEMBL cdna:known chromosome:CEL140:V:14426370:14427596:-1 gene:C15H11.9 11/11 None
C15H11.9.2 ENSEMBL cdna:known chromosome:CEL140:V:14426370:14427598:-1 gene:C15H11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14426483-14427592(-) 100.0 100.0
Public Domain and Genome References
Gene Title Human HA0609 protein like
Ensembl C15H11.9
Entrez Gene 179942 Entrez gene
SwissProt Q9XVT0 EMBL-EBI
WormBase CE08186 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15414_AT ribosome biogenesis regulatory protein (RRS1) family protein at
ATH1-121501:266093_AT ribosome biogenesis regulatory protein (RRS1) family protein at
CANINE_2:CFAAFFX.11827.1.S1_AT similar to homolog of yeast ribosome biogenesis regulatory protein RRS1 cfa
DROSOPHILA_2:1630438_AT dm
HG-U133_PLUS_2:209567_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) hs
HG-U133A:209567_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) hs
HG-U133A_2:209567_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) hs
HUGENEFL:D25218_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) hs
U133_X3P:G12804750_3P_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) hs
HG-U95AV2:36858_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) hs
MU11KSUBA:AA543365_S_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) mm
MG-U74AV2:96778_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) mm
MG-U74CV2:169462_R_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) mm
MOE430A:1416998_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) mm
MOUSE430A_2:1416998_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) mm
MOUSE430_2:1416998_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) mm
MOE430B:1456865_X_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) mm
MOUSE430_2:1456865_X_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) mm
RAE230A:1376065_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) (predicted) rn
RAT230_2:1376065_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) (predicted) rn
RG-U34B:RC_AI058889_AT RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) (predicted) rn
YEAST_2:1779516_AT Essential protein that binds ribosomal protein L11 and is required for nuclear export of the 60S pre-ribosomal subunit during ribosome biogenesis; mouse homolog shows altered expression in Huntington's disease model mice Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
42254 ribosome biogenesis and assembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02731 Hypothetical protein C15H11.9 [Caenorhabditis elegans] ref|NP_506573.1| C15H11.9 [Caenorhabditis elegans] sp|Q9XVT0|RRS1_CAEEL Ribosome biogenesis regulatory protein homolog 1.0E-149
blast CAE60901 Hypothetical protein CBG04617 [Caenorhabditis briggsae] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR007023 EMBL-EBI Ribosomal biogenesis regulatory protein 6.1E-117
Sequence
Target Sequence 
>C. ELEGANS:191079_S_AT
gatcgaaattcctgacaacgcagaagatccgaacaaggatttctttgctgagagacgcga
aaagaagaaggagagagttgcaaagaacgatatgcagagaatgaagaatcttgctcgtca
gatgaagacaacagtcaagagcggtccatcgacagaaaagatgatcggagtaggagtcga
tgccaaggaaaaatcaaagcaacaagttcgtttcgcagtggatcgtgcaaagcttgccac
agcttccgctggaaagttccaggaaggattgaagggagagaaggccaacgtgaaaactgg
caagaagagaaagttcgaagccaacgaagctccagtttctggcgagaaagaacgtgctct
ccagattcttcaacgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGAAATTCCTGACAACGCAGAA 309 417 411 Antisense
GGATTTCTTTGCTGAGAGACGCGAA 588 509 447 Antisense
GAATCTTGCTCGTCAGATGAAGACA 74 329 516 Antisense
ACAACAGTCAAGAGCGGTCCATCGA 236 113 538 Antisense
CAAGTTCGTTTCGCAGTGGATCGTG 434 183 613 Antisense
GGATCGTGCAAAGCTTGCCACAGCT 128 511 630 Antisense
GCCACAGCTTCCGCTGGAAAGTTCC 243 279 646 Antisense
CGAAGCCAACGAAGCTCCAGTTTCT 163 253 726 Antisense
GAAGCTCCAGTTTCTGGCGAGAAAG 11 343 736 Antisense
GGCGAGAAAGAACGTGCTCTCCAGA 53 543 751 Antisense
TGCTCTCCAGATTCTTCAACGAATG 131 581 765 Antisense
Sequence Source Affymetrix Proprietary Database