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[191078_at] G-protein coupled receptor

Description F13D2.2 /REP_DB=WormBase Gene ID /WP=CE03194 /TR=Q19399 /GB=CAA90604.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_high_8_8 > 03      6grp_highest_nonorm > 90      6grp_total > 79      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 136.5
(-1.8)
P 		105.8
(-2.5)
P 		85.5
(-3)
A 		337.9
(3)
P 		252
B 213.6
(1.1)
P 		102
(-2.9)
P 		99.6
(-3)
P 		265.3
(3)
P 		166
C 203.2
(0.5)
P 		116
(-1.9)
P 		76.8
(-3)
P 		291.5
(3)
P 		215
avr 184.4
(-0.2) 		107.9
(-2.4) 		87.3
(-3) 		298.2
(3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 111
(0.1)
P 		132.4
(2.6)
P 		90.2
(-2.3)
P 		84.4
(-3)
P 		136.2
(3)
P 		127.8
(2)
P 		52
B 139.9
(3)
P 		109.9
(0.6)
P 		118.4
(1.3)
P 		64
(-3)
P 		97.1
(-0.4)
P 		130.2
(2.2)
P 		76
C 108.8
(-1)
P 		149.3
(1.9)
P 		80.4
(-3)
P 		128.9
(0.5)
P 		97.2
(-1.8)
P 		164
(3)
P 		84
avr 119.9
(0.4) 		130.5
(1.7) 		96.3
(-2.5) 		92.4
(-3) 		110.2
(-0.8) 		140.7
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 49.7
(3)
P 		23
(-2.9)
P 		22.4
(-3)
A 		49.5
(3)
P 		27
B 68.1
(3)
P 		25.2
(-2.7)
P 		23.1
(-3)
P 		56.5
(1.5)
P 		45
C 67.3
(3)
P 		33.3
(-2)
P 		26.8
(-3)
P 		49.1
(0.3)
P 		41
avr 61.7
(3) 		27.2
(-2.5) 		24.1
(-3) 		51.7
(1.4) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 20.5
(-2.8)
P 		47.1
(3)
P 		19.6
(-3)
P 		21.4
(-2.6)
P 		41.1
(1.7)
P 		31.1
(-0.5)
P 		28
B 48.7
(3)
P 		36.6
(0.7)
P 		28.7
(-0.8)
P 		16.9
(-3)
P 		39.5
(1.3)
P 		48.6
(3)
P 		32
C 40.3
(0.5)
P 		45.6
(1.4)
P 		20.5
(-3)
P 		25.9
(-2.1)
P 		31.5
(-1.1)
P 		54.9
(3)
P 		34
avr 36.5
(0.9) 		43.1
(2.5) 		22.9
(-2.6) 		21.4
(-3) 		37.4
(1.1) 		44.9
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16220
Sequence Type Exemplar sequence
Representative Public ID F13D2.2 NCBI
Target Description F13D2.2 /REP_DB=WormBase Gene ID /WP=CE03194 /TR=Q19399 /GB=CAA90604.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077464 NCBI Caenorhabditis elegans F13D2.2 (F13D2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000018364 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11178822:11181072:1 11/11 None
F13D2.2 ENSEMBL cdna:known chromosome:CEL140:X:11178822:11181072:1 gene:F13D2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018360 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11178821-11181072(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl F13D2.2
Entrez Gene 184413 Entrez gene
SwissProt Q19399 EMBL-EBI
WormBase CE03194 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90604 Hypothetical protein F13D2.2 [Caenorhabditis elegans] ref|NP_509865.1| F13D2.2 [Caenorhabditis elegans] 0.0
blast CAE70690 Hypothetical protein CBG17407 [Caenorhabditis briggsae] 1.0E-161
blast CAB60305 Hypothetical protein Y105C5A.23 [Caenorhabditis elegans] ref|NP_502887.1| Y105C5A.23 [Caenorhabditis elegans] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 5.4E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509865.1 6 29-51,72-94,104-126,147-169,216-238,337-359
F13D2.2 6 29-51,72-94,104-126,147-169,216-238,337-359
GENEFINDER00000018364 6 29-51,72-94,104-126,147-169,216-238,337-359
Sequence
Target Sequence 
>C. ELEGANS:191078_AT
gactcgtttgtactaactcagacattcgagaactcttacaacattgctcatttgcttctt
gtattctggggcccactgattgttctaatcgtaacgtatgcggtgatagcaaccaagctc
acgaagtactcgttaaaagcacctggaacccagagcatgagaagacctatgccaactgca
gccgatgatttaccgaaagaagttgttgtccacgttaacgtcgaagacggtctactcaaa
aaagagggcagtataaaaaaggtggtaagatgctgtgctgaggagctcattacaaagcaa
catcgaaagaagtcgaatcgtagaatgagagccaaagaatcaacaacgacaacatcatca
acatctacacgaatgccaacgtggcggaaacaaatgcgcagtcgtgtgtttcgaaccaca
atgcttgtcattctgacccacttcctcttttggttcccttacaatgcactcggcttaatg
aaatacatcaaccaatctatgtttgaagttcttagcgcaaatgccaatattttcaaagac
ttgcaaattctcatcacactcatcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCGTTTGTACTAACTCAGACAT 593 373 616 Antisense
GAACTCTTACAACATTGCTCATTTG 248 349 645 Antisense
GGGCCCACTGATTGTTCTAATCGTA 295 493 684 Antisense
AGCAACCAAGCTCACGAAGTACTCG 297 75 723 Antisense
ACCTATGCCAACTGCAGCCGATGAT 455 87 780 Antisense
GAAGTTGTTGTCCACGTTAACGTCG 333 335 814 Antisense
CGACAACATCATCAACATCTACACG 276 253 962 Antisense
TGCGCAGTCGTGTGTTTCGAACCAC 375 579 1010 Antisense
CAATGCTTGTCATTCTGACCCACTT 604 181 1034 Antisense
CTCTTTTGGTTCCCTTACAATGCAC 538 221 1060 Antisense
CAAATTCTCATCACACTCATCAATC 78 195 1159 Antisense
Sequence Source Affymetrix Proprietary Database