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[191077_at] 7TM chemoreceptor, sri family

Description T10D4.8 /REP_DB=WormBase Gene ID /WP=CE25988 /GEN=sri-54 /TR=Q9TZF0 /GB=AAC68719.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 42      4grp_total > 19      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 9.6
(-3)
A 		71.9
(0.8)
A 		24.4
(-2.1)
A 		107
(3)
A 		97
B 31.6
(-0.7)
A 		37.8
(1.2)
A 		24.3
(-3)
A 		43.6
(3)
A 		19
C 24.3
(-1.5)
A 		11.4
(-2.9)
A 		10.3
(-3)
A 		68
(3)
A 		58
avr 21.8
(-2.8) 		40.4
(-0.7) 		19.7
(-3) 		72.9
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 6.5
(-3)
A 		24.2
(-0.2)
A 		44
(3)
A 		38.8
(2.2)
A 		29.6
(0.7)
A 		9.3
(-2.6)
A 		38
B 49.2
(3)
A 		23.9
(-0.9)
A 		30.5
(0.1)
A 		10
(-3)
A 		23.6
(-0.9)
A 		16.4
(-2)
A 		39
C 6.4
(-2.6)
A 		8.5
(-2.3)
A 		42.5
(3)
A 		13.8
(-1.4)
A 		3.8
(-3)
A 		8.2
(-2.3)
A 		39
avr 20.7
(-1) 		18.9
(-1.4) 		39
(3) 		20.9
(-0.9) 		19
(-1.3) 		11.3
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.5
(-3)
A 		15.6
(3)
A 		6.4
(-1.6)
A 		15.7
(3)
A 		12
B 10.1
(3)
A 		9.3
(1.9)
A 		5.6
(-3)
A 		9.3
(1.9)
A 		5
C 8
(0.4)
A 		3.3
(-3)
A 		3.6
(-2.8)
A 		11.5
(3)
A 		8
avr 7.2
(-1.3) 		9.4
(0.6) 		5.2
(-3) 		12.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.2
(-3)
A 		8.6
(2.2)
A 		9.6
(2.9)
A 		9.8
(3)
A 		8.9
(2.4)
A 		2.3
(-2.2)
A 		9
B 17.1
(3)
A 		7.9
(-0.8)
A 		7.4
(-1)
A 		2.7
(-3)
A 		9.6
(-0.1)
A 		6.1
(-1.6)
A 		14
C 2.4
(-2.3)
A 		2.6
(-2.1)
A 		10.8
(3)
A 		2.8
(-2)
A 		1.2
(-3)
A 		2.7
(-2.1)
A 		10
avr 6.9
(0.4) 		6.4
(-0.1) 		9.3
(3) 		5.1
(-1.5) 		6.6
(0.1) 		3.7
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4385
Sequence Type Exemplar sequence
Representative Public ID T10D4.8 NCBI
Target Description T10D4.8 /REP_DB=WormBase Gene ID /WP=CE25988 /GEN=sri-54 /TR=Q9TZF0 /GB=AAC68719.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062055 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-54) (sri-54) mRNA, complete cds. 11/11 None
GENEFINDER00000032472 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3135576:3142950:-1 11/11 None
T10D4.8 ENSEMBL cdna:known chromosome:CEL140:II:3135576:3137899:-1 gene:T10D4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032458 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3135574-3137898(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-54
Ensembl T10D4.8
Entrez Gene 191923 Entrez gene
SwissProt Q9TZF0 EMBL-EBI
WormBase CE33693 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68719 Serpentine receptor, class i protein 54 [Caenorhabditis elegans] ref|NP_494456.2| Serpentine Receptor, class I family member (sri-54) [Caenorhabditis elegans] 1.0E-176
blast AAC68720 Serpentine receptor, class i protein 42 [Caenorhabditis elegans] ref|NP_494457.1| Serpentine Receptor, class I family member (sri-42) [Caenorhabditis elegans] 1.0E-172
blast AAC68719 Serpentine receptor, class i protein 54 [Caenorhabditis elegans] ref|NP_494456.2| Serpentine Receptor, class I family member (sri-54) [Caenorhabditis elegans] 1.0E-145
blast AAC68712 Serpentine receptor, class i protein 43 [Caenorhabditis elegans] ref|NP_494458.1| Serpentine Receptor, class I family member (sri-43) [Caenorhabditis elegans] 1.0E-134
blast T32076 hypothetical protein F22E5.15 - Caenorhabditis elegans 1.0E-100
blast CAE63429 Hypothetical protein CBG07875 [Caenorhabditis briggsae] 8.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.9E-68
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-80
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494456.2 7 15-36,48-70,90-112,132-154,192-214,246-268,272-294
T10D4.8 7 15-36,48-70,90-112,132-154,192-214,246-268,272-294
GENEFINDER00000032472 13 10-32,44-66,86-108,129-151,186-208,235-257,267-289,332-354,358-380,401-423,462-484,516-538,542-564
Sequence
Target Sequence 
>C. ELEGANS:191077_AT
tttgaccttcaccatgggggttacaggatttttgtccgtattatctgtgccggaggatct
gaagtttgattttgtggaaatgaactaccccgacctcttaccccaattccagaagctccc
aaacttttcaatctatgaattctcttcaaagtttctggcgttaataattttctcaattct
tggaggatttttatcttttactgtgtttatcctagtacttgtcaatatcctccgtatgct
gacaattctcaagctcaaaatctcaagctcaaactaccaaaagcaccgggccgcaatccg
aagtctgtcggctcagttcgtcacgtcagcggtgatctttgtgccgcccatagtgtgcgt
cgttgtgataatggtcggattgaatggctcacagttaatagtagaagtgttcctaatggt
cgcttgcctccactccacgttaaatgttatagttctaattgtcacttgtcctccgtatcg
aagatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGACCTTCACCATGGGGGTTACA 657 667 447 Antisense
ATTTTTGTCCGTATTATCTGTGCCG 181 15 474 Antisense
TTGTGGAAATGAACTACCCCGACCT 484 707 518 Antisense
ATTCCAGAAGCTCCCAAACTTTTCA 366 5 552 Antisense
GTACTTGTCAATATCCTCCGTATGC 345 459 661 Antisense
GGGCCGCAATCCGAAGTCTGTCGGC 522 491 734 Antisense
AGTTCGTCACGTCAGCGGTGATCTT 178 65 761 Antisense
CCGCCCATAGTGTGCGTCGTTGTGA 346 263 790 Antisense
GAAGTGTTCCTAATGGTCGCTTGCC 423 335 850 Antisense
TAGTTCTAATTGTCACTTGTCCTCC 416 653 896 Antisense
ACTTGTCCTCCGTATCGAAGATTTT 246 103 910 Antisense
Sequence Source Affymetrix Proprietary Database