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[191074_at] UDP-glucuronysltransferase

Description ZC455.3 /REP_DB=WormBase Gene ID /WP=CE06592 /TR=Q23333 /GB=CAA99954.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster 6grp_total > 52      4grp_total > 30      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 74.5
(3)
M 		9.6
(-3)
A 		21
(-1.9)
A 		34.8
(-0.7)
A 		65
B 70.2
(3)
P 		66.8
(2.7)
A 		6.5
(-3)
A 		48.3
(0.9)
A 		64
C 57.2
(-0.6)
A 		30.8
(-3)
A 		30.5
(-3)
A 		98.1
(3)
A 		68
avr 67.3
(3) 		35.7
(-1) 		19.3
(-3) 		60.4
(2.1) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 22.1
(-3)
A 		66
(-0.6)
P 		132.9
(3)
P 		63.3
(-0.8)
P 		27.3
(-2.7)
A 		31.3
(-2.5)
A 		111
B 61.7
(0.2)
A 		55.1
(-0.8)
P 		80.7
(3)
P 		58.7
(-0.2)
P 		52.9
(-1.1)
A 		39.9
(-3)
A 		41
C 62.7
(0.3)
A 		67
(0.7)
P 		72.3
(1.2)
P 		75.5
(1.5)
P 		92
(3)
P 		25.8
(-3)
A 		66
avr 48.8
(-1.4) 		62.7
(-0.1) 		95.3
(3) 		65.8
(0.2) 		57.4
(-0.6) 		32.3
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 27.1
(3)
M 		2.1
(-3)
A 		5.5
(-2.2)
A 		5.1
(-2.3)
A 		25
B 22.4
(3)
P 		16.5
(1.3)
A 		1.5
(-3)
A 		10.3
(-0.5)
A 		21
C 18.9
(3)
A 		8.9
(-3)
A 		10.6
(-2)
A 		16.5
(1.6)
A 		10
avr 22.8
(3) 		9.2
(-1.8) 		5.9
(-3) 		10.6
(-1.3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 4.1
(-3)
A 		23.5
(1.7)
P 		29
(3)
P 		16
(-0.1)
P 		8.2
(-2)
A 		7.6
(-2.2)
A 		25
B 21.5
(3)
A 		18.4
(0.2)
P 		19.6
(1.3)
P 		15.6
(-2.4)
P 		21.5
(3)
A 		14.9
(-3)
A 		7
C 23.2
(1.1)
A 		20.5
(0.4)
P 		18.4
(-0.2)
P 		15.2
(-1.1)
P 		29.8
(3)
P 		8.6
(-3)
A 		21
avr 16.3
(-0) 		20.8
(2.2) 		22.3
(3) 		15.6
(-0.4) 		19.8
(1.7) 		10.4
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191074_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14444
Sequence Type Exemplar sequence
Representative Public ID ZC455.3 NCBI
Target Description ZC455.3 /REP_DB=WormBase Gene ID /WP=CE06592 /TR=Q23333 /GB=CAA99954.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073802 NCBI Caenorhabditis elegans ZC455.3 (UDP-glucuronysltransferase) mRNA, complete cds. 11/11 None
SNAP00000034472 ENSEMBL cdna:SNAP chromosome:CEL140:V:12795700:12802783:-1 11/11 None
GENEFINDER00000034480 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12791787:12803621:-1 11/11 None
ZC455.3 ENSEMBL cdna:known chromosome:CEL140:V:12800917:12802783:-1 gene:ZC455.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12800916-12802783(-) 98.36 100.0
Public Domain and Genome References
Gene Title UDP-glucuronysltransferase
Gene Symbol ugt-3
Ensembl ZC455.3
Entrez Gene 191174 Entrez gene
SwissProt Q23333 EMBL-EBI
WormBase CE06592 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99954 Hypothetical protein ZC455.3 [Caenorhabditis elegans] ref|NP_506203.1| ZC455.3 [Caenorhabditis elegans] 0.0
blast CAA99955 Hypothetical protein ZC455.4 [Caenorhabditis elegans] ref|NP_506202.1| ZC455.4 [Caenorhabditis elegans] 0.0
blast CAA99956 Hypothetical protein ZC455.5 [Caenorhabditis elegans] ref|NP_506201.1| ZC455.5 [Caenorhabditis elegans] 0.0
blast CAA99957 Hypothetical protein ZC455.6a [Caenorhabditis elegans] ref|NP_506200.1| ZC455.6a [Caenorhabditis elegans] 0.0
blast CAA94871 Hypothetical protein AC3.8 [Caenorhabditis elegans] ref|NP_505672.2| AC3.8 [Caenorhabditis elegans] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.2E-27
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-29
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.2E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-12
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 6.5E-67
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-21
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.5E-10
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-12
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.2E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506203.1 2 5-27,492-514
ZC455.3 2 5-27,492-514
SNAP00000034472 2 5-27,1313-1335
GENEFINDER00000034480 9 488-510,517-539,1372-1394,1840-1859,1874-1893,1906-1928,1959-1981,1997-2019,2034-2052
Sequence
Target Sequence 
>C. ELEGANS:191074_AT
atttcgcagaatgccagatgctacatttatctggaaatatgaagaggatgataagacgtt
gaagaataaactttctgaaaacgtagttttaagcaagtggattcctcagccagctctgtt
agcagacagtcgattagatttgtttgtgactcatggaggtttgggaagtactatggaagt
tggatatgcaggagtgtcaagtattatggttcctgtattcagtgatcaaggagtaaatgc
agagatgttagctcgccatggtggtgccattgtctatgacaaatttgatcttgtcgatag
caagaaactaatggagacgatccagatgattctcaataattctgattacagaaagaattc
gaaacgtctttctgatattcttcataatcaaccaatggatccgaagcaagtacttctaaa
tcattgcgaatttgcggctcgatttgcacaggttgataatttagaaccatacgccaataa
atacaactttatcgaattttattgtcttgacagtctagcattggttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCGCAGAATGCCAGATGCTACA 495 17 972 Antisense
TAAGCAAGTGGATTCCTCAGCCAGC 701 637 1061 Antisense
CTCAGCCAGCTCTGTTAGCAGACAG 550 227 1076 Antisense
GAGTGTCAAGTATTATGGTTCCTGT 475 399 1163 Antisense
ATGGTTCCTGTATTCAGTGATCAAG 401 51 1177 Antisense
TGCAGAGATGTTAGCTCGCCATGGT 314 577 1209 Antisense
TCGCCATGGTGGTGCCATTGTCTAT 297 599 1224 Antisense
AGACGATCCAGATGATTCTCAATAA 306 71 1286 Antisense
AAATCATTGCGAATTTGCGGCTCGA 426 117 1389 Antisense
TGCGGCTCGATTTGCACAGGTTGAT 142 579 1404 Antisense
GTCTTGACAGTCTAGCATTGGTTGT 48 469 1475 Antisense
Sequence Source Affymetrix Proprietary Database