[Home] | [Total List]

[191071_at] glutathione S-transferase

Description ZK697.6 /REP_DB=WormBase Gene ID /WP=CE15405 /TR=O44576 /GB=AAC48244.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_high1_10_10 > 06      4grp_high_8_8 > 12      6grp_total > 07      4grp_total > 12      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 209.6
(-2)
P 		192.3
(-2.6)
A 		179.5
(-3)
M 		355.7
(3)
P 		176
B 249.8
(1.7)
P 		214.9
(0.1)
P 		149
(-3)
P 		277.7
(3)
P 		129
C 247.5
(-1.1)
P 		209.5
(-2.9)
A 		207.8
(-3)
P 		330.6
(3)
P 		123
avr 235.6
(-0.6) 		205.6
(-1.9) 		178.8
(-3) 		321.3
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 235.3
(3)
P 		181.1
(0.5)
P 		175.4
(0.2)
P 		172.6
(0.1)
P 		153.4
(-0.8)
P 		107.1
(-3)
A 		128
B 300.4
(3)
P 		183.8
(-1.1)
P 		178.3
(-1.3)
P 		178.2
(-1.3)
P 		128.9
(-3)
P 		143
(-2.5)
P 		172
C 209.3
(2.8)
P 		212.9
(3)
P 		173.5
(0.5)
P 		174.6
(0.5)
P 		119.9
(-3)
M 		142.1
(-1.6)
P 		93
avr 248.3
(3) 		192.6
(0.2) 		175.7
(-0.7) 		175.1
(-0.7) 		134.1
(-2.8) 		130.7
(-3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 76.3
(3)
P 		41.7
(-3)
A 		46.9
(-2.1)
M 		52.1
(-1.2)
P 		35
B 79.7
(3)
P 		53.1
(-0.5)
P 		34.5
(-3)
P 		59.2
(0.3)
P 		45
C 81.9
(3)
P 		60.2
(-2)
A 		72.4
(0.8)
P 		55.7
(-3)
P 		26
avr 79.3
(3) 		51.7
(-2.9) 		51.3
(-3) 		55.7
(-2.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 43.4
(-0.3)
P 		64.4
(3)
P 		38.2
(-1.1)
P 		43.8
(-0.2)
P 		46.3
(0.2)
P 		26.1
(-3)
A 		38
B 104.5
(3)
P 		61.2
(-1.2)
P 		43.3
(-3)
P 		47.2
(-2.6)
P 		52.4
(-2.1)
P 		53.3
(-2)
P 		61
C 77.6
(3)
P 		64.9
(1.2)
P 		44.1
(-1.7)
P 		35.1
(-3)
P 		38.8
(-2.5)
M 		47.6
(-1.2)
P 		43
avr 75.2
(3) 		63.5
(0.9) 		41.9
(-3) 		42
(-3) 		45.8
(-2.3) 		42.3
(-2.9) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14880
Sequence Type Exemplar sequence
Representative Public ID ZK697.6 NCBI
Target Description ZK697.6 /REP_DB=WormBase Gene ID /WP=CE15405 /TR=O44576 /GB=AAC48244.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071091 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-21) (gst-21) mRNA, complete cds. 11/11 None
SNAP00000036766 ENSEMBL cdna:SNAP chromosome:CEL140:V:1730588:1731371:-1 11/11 None
GENEFINDER00000036775 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1730588:1731371:-1 11/11 None
ZK697.6 ENSEMBL cdna:known chromosome:CEL140:V:1730588:1731371:-1 gene:ZK697.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171053 1/11 Cross Hyb Matching Probes None
SNAP00000026543 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026546 1/11 Cross Hyb Matching Probes None
Y1H11.1 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1730587-1731371(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-21
Ensembl ZK697.6
Entrez Gene 191412 Entrez gene
SwissProt O44576 EMBL-EBI
WormBase CE15405 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48244 Glutathione s-transferase protein 21 [Caenorhabditis elegans] ref|NP_503492.1| Glutathione S-Transferase family member (gst-21) [Caenorhabditis elegans] 1.0E-125
blast AAM19064 Glutathione s-transferase protein 35 [Caenorhabditis elegans] ref|NP_741061.2| Glutathione S-Transferase family member (gst-35) [Caenorhabditis elegans] 4.0E-65
blast AAO38568 Glutathione s-transferase protein 34 [Caenorhabditis elegans] ref|NP_741060.2| Glutathione S-Transferase family member (gst-34) [Caenorhabditis elegans] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 4.5E-4
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 3.3E-17
Sequence
Target Sequence 
>C. ELEGANS:191071_AT
tgctcttccatcttggtggagttccatttgaagattcaagaattccagttgacatgaaaa
cgggattgataatgaacccggagcttgcggatgttaagaaaaaagccccattcggaaagt
atccagttttaaaaatcgatgatatagaaattgctcagtcagctgctatcaatcgttacc
ttgcgagacaattcggatttgctggaaaaaatcccatagaggaagctcaagcggattcct
atatcgatcaatgccaagagtataacacttcattccgcgcatgcatgtatgcaactcttc
aaggaaaacccgaagaagaagttcaaaaaattcgcgaagaagtctacatacctgctcaaa
acaagttttatgaaatattcagtgacattttgaaccgtaacaagtctggatttcttgttg
gtgacagccttacttgggctgatcttgtcattgcggatcatttgtacagcttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTTCCATCTTGGTGGAGTTCC 315 581 71 Antisense
AATGAACCCGGAGCTTGCGGATGTT 304 151 141 Antisense
GAAATTGCTCAGTCAGCTGCTATCA 438 363 217 Antisense
GCTGCTATCAATCGTTACCTTGCGA 270 297 232 Antisense
GCGGATTCCTATATCGATCAATGCC 405 293 301 Antisense
AAGAGTATAACACTTCATTCCGCGC 369 153 326 Antisense
CATTCCGCGCATGCATGTATGCAAC 154 217 341 Antisense
GAAGAAGTCTACATACCTGCTCAAA 127 341 406 Antisense
CTTGTTGGTGACAGCCTTACTTGGG 478 217 484 Antisense
TTACTTGGGCTGATCTTGTCATTGC 656 683 500 Antisense
TTGCGGATCATTTGTACAGCTTGGA 428 703 521 Antisense
Sequence Source Affymetrix Proprietary Database