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[191069_at] 7TM chemoreceptor, sri family

Description ZK697.4 /REP_DB=WormBase Gene ID /WP=CE26352 /GEN=sri-27 /TR=O44574 /GB=AAC48247.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 4grp_high_8_8 > 20      6grp_total > 27      4grp_total > 19      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 27.1
(-3)
A 		44.4
(1)
A 		46.8
(1.5)
A 		53.1
(3)
P 		26
B 35.1
(0.3)
P 		45.9
(1.7)
A 		9.5
(-3)
A 		56.1
(3)
P 		47
C 61.6
(-1.8)
P 		52.7
(-2.2)
P 		34.8
(-3)
P 		164.7
(3)
P 		130
avr 41.3
(-1.9) 		47.7
(-1.3) 		30.4
(-3) 		91.3
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 39.9
(0.7)
A 		38.2
(0.4)
A 		54.9
(3)
P 		15.9
(-3)
A 		33.6
(-0.3)
A 		31.1
(-0.7)
P 		39
B 38.7
(3)
P 		38.5
(3)
P 		6.3
(-3)
A 		11.9
(-2)
A 		19.4
(-0.6)
A 		28.9
(1.2)
A 		32
C 28.9
(2)
P 		25.8
(0.8)
A 		16.1
(-3)
A 		28.7
(1.9)
A 		31.6
(3)
A 		29.8
(2.3)
A 		16
avr 35.8
(3) 		34.2
(2.4) 		25.8
(-0.5) 		18.8
(-3) 		28.2
(0.3) 		29.9
(0.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 9.9
(-0.1)
A 		9.6
(-0.5)
A 		12.2
(3)
A 		7.8
(-3)
P 		4
B 11.2
(2.5)
P 		11.3
(2.6)
A 		2.2
(-3)
A 		12
(3)
P 		10
C 20.4
(0.2)
P 		15.2
(-1.8)
P 		12.1
(-3)
P 		27.8
(3)
P 		16
avr 13.8
(1.2) 		12
(-0.3) 		8.8
(-3) 		15.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.4
(-0.9)
A 		13.6
(3)
A 		11.9
(1.9)
P 		4
(-3)
A 		10.2
(0.9)
A 		7.6
(-0.8)
P 		10
B 13.5
(3)
P 		12.8
(2.7)
P 		1.5
(-3)
A 		3.1
(-2.2)
A 		7.9
(0.2)
A 		10.8
(1.7)
A 		12
C 10.7
(3)
P 		7.9
(0.5)
A 		4.1
(-3)
A 		5.8
(-1.5)
A 		10.2
(2.5)
A 		10
(2.4)
A 		7
avr 10.5
(2.2) 		11.4
(3) 		5.8
(-1.7) 		4.3
(-3) 		9.4
(1.3) 		9.5
(1.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15832
Sequence Type Exemplar sequence
Representative Public ID ZK697.4 NCBI
Target Description ZK697.4 /REP_DB=WormBase Gene ID /WP=CE26352 /GEN=sri-27 /TR=O44574 /GB=AAC48247.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071089 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-27) (sri-27) mRNA, complete cds. 11/11 None
ZK697.4 ENSEMBL cdna:known chromosome:CEL140:V:1725482:1727461:1 gene:ZK697.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036772 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1725481-1727461(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-27
Ensembl ZK697.4
Entrez Gene 191902 Entrez gene
SwissProt O44574 EMBL-EBI
WormBase CE26352 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48247 Serpentine receptor, class i protein 27 [Caenorhabditis elegans] ref|NP_503490.1| Serpentine Receptor, class I family member (sri-27) [Caenorhabditis elegans] 0.0
blast CAE72457 Hypothetical protein CBG19629 [Caenorhabditis briggsae] 1.0E-101
blast AAB70941 Serpentine receptor, class i protein 28 [Caenorhabditis elegans] ref|NP_494433.1| Serpentine Receptor, class I family member (sri-28) [Caenorhabditis elegans] 2.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.7E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503490.1 7 20-42,65-87,97-119,139-158,198-220,249-271,281-303
ZK697.4 7 20-42,65-87,97-119,139-158,198-220,249-271,281-303
Sequence
Target Sequence 
>C. ELEGANS:191069_AT
gatattacaagctccgccaattatatatatcatgtgtggtattcattttgtttgctattt
ccttttgcaattgcgttttccatttaccgtagtggcgacacattgcatgaacaaatgaga
attctagaagagctgtatcctgaatatgcaggtcaatttgggaatcttcgagaatttcaa
tattatcccatgaacaataagttgattttattttttgcacttgttacatttggaaccaca
aaatccactgtcctgataacatgccttgtttaccgaatgtacacagcactgacaagaatt
caaagccgactatccacctatgaccttgtcaaacacaaagttgttttaaaaagtttgata
gttcagtttttgacaactccaatctcattcattcctgttttcgttataatgatgactgtg
atagttcctacatatcactcgcaggaaatctcttgggttgcttgcatggtttctacaact
cact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTACAAGCTCCGCCAATTATA 304 427 400 Antisense
GTATTCATTTTGTTTGCTATTTCCT 408 453 438 Antisense
GCTATTTCCTTTTGCAATTGCGTTT 51 305 453 Antisense
GCGTTTTCCATTTACCGTAGTGGCG 163 285 472 Antisense
GAACCACAAAATCCACTGTCCTGAT 314 345 632 Antisense
AGAATTCAAAGCCGACTATCCACCT 636 75 694 Antisense
TGACAACTCCAATCTCATTCATTCC 661 571 770 Antisense
CTCATTCATTCCTGTTTTCGTTATA 334 229 783 Antisense
ATAGTTCCTACATATCACTCGCAGG 565 21 820 Antisense
GAAATCTCTTGGGTTGCTTGCATGG 367 363 844 Antisense
GCTTGCATGGTTTCTACAACTCACT 235 305 859 Antisense
Sequence Source Affymetrix Proprietary Database