[Home] | [Total List]

[191068_at] Transthyretin-like family

Description T05A10.3 /REP_DB=WormBase Gene ID /WP=CE03635 /TR=Q22192 /GB=CAA92135.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_total > 99      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 29.9
(-2.8)
A 		29.1
(-3)
A 		30.3
(-2.8)
A 		59.4
(3)
A 		30
B 22.7
(0.1)
A 		3.2
(-3)
A 		41.5
(3)
A 		28.6
(1)
A 		38
C 5.2
(-3)
A 		30.6
(-0.9)
A 		26.7
(-1.2)
A 		77.1
(3)
P 		72
avr 19.3
(-3) 		21
(-2.7) 		32.8
(-0.7) 		55
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1021
1 2 3 4 5 6 range
A 50.1
(-2.7)
A 		2.5
(-3)
A 		51.3
(-2.6)
A 		130
(-2.1)
P 		727.1
(2.2)
P 		831.9
(3)
P 		829
B 19.1
(-2.9)
A 		36.2
(-2.8)
A 		4.8
(-3)
A 		107.6
(-2.4)
P 		891.4
(2.2)
P 		1023.1
(3)
P 		1018
C 27.7
(-2.9)
A 		35.8
(-2.8)
A 		13
(-3)
A 		139.3
(-2.2)
P 		739
(1.8)
P 		920.8
(3)
P 		908
avr 32.3
(-2.9) 		24.8
(-3) 		23
(-3) 		125.6
(-2.3) 		785.8
(2.1) 		925.3
(3) 		902
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.9
(3)
A 		6.3
(-3)
A 		7.9
(-0.9)
A 		8.7
(0.1)
A 		5
B 7.3
(1.4)
A 		0.8
(-3)
A 		9.6
(3)
A 		6.1
(0.6)
A 		9
C 1.7
(-3)
A 		8.8
(0.8)
A 		9.3
(1)
A 		13
(3)
P 		11
avr 6.6
(-1.1) 		5.3
(-3) 		8.9
(2.4) 		9.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 381
1 2 3 4 5 6 range
A 9.2
(-2.8)
A 		0.9
(-3)
A 		11.2
(-2.7)
A 		33
(-2.1)
P 		219.4
(3)
P 		202.5
(2.5)
P 		219
B 6.6
(-2.9)
A 		12.1
(-2.8)
A 		1.2
(-3)
A 		28.5
(-2.6)
P 		362.1
(2.7)
P 		381.5
(3)
P 		380
C 10.3
(-2.9)
A 		10.9
(-2.9)
A 		3.3
(-3)
A 		28
(-2.5)
P 		239.1
(1.6)
P 		308.2
(3)
P 		305
avr 8.7
(-2.9) 		8
(-2.9) 		5.2
(-3) 		29.8
(-2.5) 		273.5
(2.5) 		297.4
(3) 		292
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191068_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16230
Sequence Type Exemplar sequence
Representative Public ID T05A10.3 NCBI
Target Description T05A10.3 /REP_DB=WormBase Gene ID /WP=CE03635 /TR=Q22192 /GB=CAA92135.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077400(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077400 NCBI Caenorhabditis elegans T05A10.3 (T05A10.3) mRNA, complete cds. 11/11 None
SNAP00000000837 ENSEMBL cdna:SNAP chromosome:CEL140:X:10787471:10789474:1 11/11 None
GENEFINDER00000000843 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10787471:10789474:1 11/11 None
T05A10.3 ENSEMBL cdna:known chromosome:CEL140:X:10787450:10789554:1 gene:T05A10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10787470-10789474(+) 89.76 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl T05A10.3
Entrez Gene 181272 Entrez gene
SwissProt Q22192 EMBL-EBI
WormBase CE03635 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92135 Hypothetical protein T05A10.3 [Caenorhabditis elegans] ref|NP_509801.1| T05A10.3 [Caenorhabditis elegans] 1.0E-105
blast CAE70822 Hypothetical protein CBG17593 [Caenorhabditis briggsae] 5.0E-79
blast CAA82657 Hypothetical protein K03H1.4 [Caenorhabditis elegans] ref|NP_499203.1| K03H1.4 [Caenorhabditis elegans] sp|P34500|YMS4_CAEEL Hypothetical UPF0205 protein K03H1.4 in chromosome III precursor 4.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 1.9E-50
Sequence
Target Sequence 
>C. ELEGANS:191068_AT
agatggcatcaagttctgaacacattaccaaagataatgaagagcatcatgttgatcacc
aagaacatcacgaagtttcagatgaagaaagaagaatcgaagaggagcgatttagacttg
aagaagaacaaaaaaggttggatgaaatcagaaggctagaggaagaaagtcttagattgg
aagaaatccgtcgcattgaagaagaaaagaaacgcatagaagaaatcagacgtcaagaag
aagagcaacaaagaattgagttagaacgtagagaagaagaacgtcgattggagtctgaac
gaagagccgaggaagaacgaaagcgggaagaagaagcaaaacttcaagagcaaagaagaa
gagagcaagaagacgaacacaaaagaagaatggaggaatatcacagaagagaacaggaac
gtcaagaagccctgaaacgacgagaggaggaaattaaaagaagagaggagggcgagaaaa
ctcgaactgtctcatcttctgaaaaggttgaaaagaaggatccatgtgtgcactatccag
ttttaacacagggtcaatcgttcagccgatctattgagcttcgacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGGCATCAAGTTCTGAACACAT 303 67 614 Antisense
GAAGAGCATCATGTTGATCACCAAG 350 339 652 Antisense
GATCACCAAGAACATCACGAAGTTT 497 419 667 Antisense
GGAAGAAATCCGTCGCATTGAAGAA 117 531 792 Antisense
GAAGAACGTCGATTGGAGTCTGAAC 115 341 889 Antisense
GAACGTCAAGAAGCCCTGAAACGAC 109 347 1030 Antisense
AAACTCGAACTGTCTCATCTTCTGA 5 129 1091 Antisense
GAAGGATCCATGTGTGCACTATCCA 84 335 1128 Antisense
GCACTATCCAGTTTTAACACAGGGT 170 315 1143 Antisense
ACAGGGTCAATCGTTCAGCCGATCT 347 107 1161 Antisense
CAGCCGATCTATTGAGCTTCGACAT 675 201 1176 Antisense
Sequence Source Affymetrix Proprietary Database