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[191067_at] 7TM chemoreceptor, str family

Description C24B9.8 /REP_DB=WormBase Gene ID /WP=CE17450 /GEN=str-13 /TR=O76436 /GB=AAC19248.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 55      4grp_total > 11      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 10
(-3)
A 		56.4
(3)
A 		29.4
(-0.5)
A 		51.1
(2.3)
M 		46
B 36
(0.4)
A 		7.1
(-2.8)
A 		5.7
(-3)
A 		59.1
(3)
P 		53
C 32.4
(-0.8)
A 		13.4
(-2.9)
A 		12.6
(-3)
A 		65.9
(3)
A 		53
avr 26.1
(-1.6) 		25.6
(-1.6) 		15.9
(-3) 		58.7
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 3
(-2.7)
A 		2.8
(-2.7)
A 		6.2
(-2)
A 		1.5
(-3)
A 		18.4
(0.5)
A 		30.5
(3)
A 		29
B 26.9
(1.4)
A 		35.1
(3)
A 		29.2
(1.9)
A 		16.6
(-0.6)
A 		4
(-3)
A 		26.2
(1.3)
A 		31
C 1.7
(-3)
A 		34.1
(0.8)
A 		52.2
(3)
A 		18.3
(-1)
A 		3.2
(-2.8)
A 		32.5
(0.7)
A 		51
avr 10.5
(-2.4) 		24
(1.4) 		29.2
(2.9) 		12.1
(-2) 		8.5
(-3) 		29.7
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.6
(-3)
A 		12.2
(3)
A 		7.7
(-0.1)
A 		7.5
(-0.3)
M 		9
B 11.5
(2.4)
A 		1.8
(-2.7)
A 		1.3
(-3)
A 		12.6
(3)
P 		11
C 10.7
(2.7)
A 		3.8
(-3)
A 		4.4
(-2.5)
A 		11.1
(3)
A 		7
avr 8.6
(1.2) 		5.9
(-1.6) 		4.5
(-3) 		10.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.6
(-2.8)
A 		1
(-2.5)
A 		1.3
(-2.2)
A 		0.4
(-3)
A 		5.5
(1.4)
A 		7.4
(3)
A 		7
B 9.4
(1.6)
A 		11.7
(3)
A 		7.1
(0.3)
A 		4.4
(-1.3)
A 		1.6
(-3)
A 		9.8
(1.9)
A 		10
C 0.6
(-3)
A 		10.4
(1.6)
A 		13.3
(3)
A 		3.7
(-1.5)
A 		1
(-2.8)
A 		10.9
(1.9)
A 		13
avr 3.5
(-2.3) 		7.7
(1.5) 		7.2
(1) 		2.8
(-2.9) 		2.7
(-3) 		9.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15136
Sequence Type Exemplar sequence
Representative Public ID C24B9.8 NCBI
Target Description C24B9.8 /REP_DB=WormBase Gene ID /WP=CE17450 /GEN=str-13 /TR=O76436 /GB=AAC19248.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071339(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071339 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-13) (str-13) mRNA, complete cds. 11/11 None
GENEFINDER00000038293 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2725729:2727028:-1 11/11 None
C24B9.8 ENSEMBL cdna:known chromosome:CEL140:V:2725729:2727028:-1 gene:C24B9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038279 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2725728-2727028(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-13
Ensembl C24B9.8
Entrez Gene 191968 Entrez gene
SwissProt O76436 EMBL-EBI
WormBase CE17450 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19248 Seven tm receptor protein 13 [Caenorhabditis elegans] ref|NP_503740.1| Seven TM Receptor family member (str-13) [Caenorhabditis elegans] 0.0
blast CAB03804 Hypothetical protein B0391.4 [Caenorhabditis elegans] ref|NP_872211.1| Seven TM Receptor family member (str-12) [Caenorhabditis elegans] 1.0E-160
blast CAE61125 Hypothetical protein CBG04884 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.8E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503740.1 7 15-37,44-66,96-118,138-160,204-226,254-276,286-308
C24B9.8 7 15-37,44-66,96-118,138-160,204-226,254-276,286-308
GENEFINDER00000038293 7 15-37,44-66,96-118,138-160,204-226,254-276,286-308
Sequence
Target Sequence 
>C. ELEGANS:191067_AT
tctattgcgcattttttggctttcaatatgctcttggtacctactttttcttagcaagag
acgaaataacagatgactaccttcgtgaagatatgcttcttagatataatgcgaatataa
ctgagatcccagcaatggcaatagttgcctatgatcctgtggatggatcagtaagatgga
gaaatgttataggaatattgaacatttgctcaattgtcaactttcaatatggtgtcatga
tctactgcggatggtcgatgcacacaaaaatggaagataaaattaagaatttttcggaga
ctcttagaaaactccacaaacagtttttcaagactctggtgctccagataacagctccta
caatcatattattcattcccatcacaattataatatttcttcctctgttcaacttagacg
tcagtcttccatctggtgtcatgctatgcagcttcgcattgtatcctcccactgattcat
tcatcgtcatgttcgttgtgtcggagtatagaagtactgccaaaagaactctagcaactt
tttcaaacggcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTATTGCGCATTTTTTGGCTTTCA 577 615 437 Antisense
ATATGCTCTTGGTACCTACTTTTTC 536 21 462 Antisense
AACAGATGACTACCTTCGTGAAGAT 316 137 504 Antisense
ATATGGTGTCATGATCTACTGCGGA 493 19 663 Antisense
TACTGCGGATGGTCGATGCACACAA 436 647 679 Antisense
AGTTTTTCAAGACTCTGGTGCTCCA 487 63 758 Antisense
TGGTGCTCCAGATAACAGCTCCTAC 390 553 773 Antisense
TCAGTCTTCCATCTGGTGTCATGCT 359 623 857 Antisense
TATGCAGCTTCGCATTGTATCCTCC 695 655 881 Antisense
CCCACTGATTCATTCATCGTCATGT 704 255 904 Antisense
CTAGCAACTTTTTCAAACGGCATCA 307 225 967 Antisense
Sequence Source Affymetrix Proprietary Database