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[191066_s_at]

Description ZC455.6 /REP_DB=WormBase Gene ID /WP=CE24705 /TR=Q23336 /GB=CAA99957.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 30      4grp_high_8_8 > 06      6grp_highest_nonorm > 42      6grp_total > 50      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1564
1 2 3 4 range
A 1324.7
(-2.6)
P 		1252.1
(-3)
P 		1284.5
(-2.8)
P 		2384.1
(3)
P 		1132
B 1089.9
(-3)
P 		1099.2
(-2.9)
P 		1286.5
(-1.9)
P 		2138
(3)
P 		1048
C 1272.8
(-1)
P 		820.4
(-3)
P 		976.6
(-2.3)
P 		2210.8
(3)
P 		1390
avr 1229.1
(-2.1) 		1057.2
(-3) 		1182.5
(-2.4) 		2244.3
(3) 		1187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 782
1 2 3 4 5 6 range
A 1225.3
(3)
P 		844.8
(-0.1)
P 		894.4
(0.3)
P 		967.5
(0.9)
P 		529.5
(-2.7)
P 		498.3
(-3)
P 		727
B 787.5
(0.5)
P 		699.1
(-0.4)
P 		1031
(3)
P 		856.8
(1.2)
P 		695.4
(-0.4)
P 		443
(-3)
P 		588
C 870.2
(2)
P 		733
(0.3)
P 		771
(0.8)
P 		944.3
(3)
P 		519
(-2.5)
P 		478.6
(-3)
P 		466
avr 961
(3) 		759
(0.5) 		898.8
(2.2) 		922.9
(2.5) 		581.3
(-1.7) 		473.3
(-3) 		488
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 482.3
(3)
P 		271.8
(-3)
P 		335.8
(-1.2)
P 		349
(-0.8)
P 		211
B 347.6
(-0.5)
P 		271.5
(-3)
P 		298.1
(-2.1)
P 		455.6
(3)
P 		184
C 421.3
(3)
P 		235.9
(-3)
P 		340.4
(0.4)
P 		372.8
(1.4)
P 		185
avr 417.1
(3) 		259.7
(-3) 		324.8
(-0.5) 		392.5
(2.1) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 225.9
(0.5)
P 		300.5
(3)
P 		194.8
(-0.5)
P 		245.4
(1.2)
P 		159.8
(-1.7)
P 		121.3
(-3)
P 		179
B 274
(2.6)
P 		232.7
(0.5)
P 		250.4
(1.4)
P 		226.9
(0.2)
P 		282.5
(3)
P 		165.2
(-3)
P 		117
C 322.5
(3)
P 		223.7
(-0.7)
P 		196.2
(-1.7)
P 		189.9
(-1.9)
P 		167.9
(-2.7)
P 		160.2
(-3)
P 		162
avr 274.1
(3) 		252.3
(2) 		213.8
(0.1) 		220.7
(0.4) 		203.4
(-0.4) 		148.9
(-3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191066_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14117
Sequence Type Exemplar sequence
Representative Public ID ZC455.6 NCBI
Target Description ZC455.6 /REP_DB=WormBase Gene ID /WP=CE24705 /TR=Q23336 /GB=CAA99957.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073799 NCBI Caenorhabditis elegans ZC455.6a (UDP-glucuronysltransferase) mRNA, complete cds. 11/11 None
SNAP00000034471 ENSEMBL cdna:SNAP chromosome:CEL140:V:12793304:12795411:-1 11/11 None
ZC455.6a ENSEMBL cdna:known chromosome:CEL140:V:12793301:12795526:-1 gene:ZC455.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034480 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179753 2 1 NM_073799 191066_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12793303-12795513(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZC455.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99957 Hypothetical protein ZC455.6a [Caenorhabditis elegans] ref|NP_506200.1| ZC455.6a [Caenorhabditis elegans] 0.0
blast CAE63999 Hypothetical protein CBG08593 [Caenorhabditis briggsae] 0.0
blast CAA99956 Hypothetical protein ZC455.5 [Caenorhabditis elegans] ref|NP_506201.1| ZC455.5 [Caenorhabditis elegans] 1.0E-178
blast CAE63999 Hypothetical protein CBG08593 [Caenorhabditis briggsae] 1.0E-175
blast CAA99956 Hypothetical protein ZC455.5 [Caenorhabditis elegans] ref|NP_506201.1| ZC455.5 [Caenorhabditis elegans] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.2E-24
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.7E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506200.1 2 7-29,500-522
ZC455.6a 2 7-29,500-522
SNAP00000034471 1 466-488
Sequence
Target Sequence 
>C. ELEGANS:191066_S_AT
taatgtccatctttccacttggtttcctcaacagtctctcctagctgataaaagagtaaa
actatttataacacacggaggactgggaagtacaatggaactagcatactctgcgaaacc
agcaatcgtgactccactttttgcggaccaacccagcaatgcacaaatgcttgaaaggca
tgggagtgttgaagtactttctaagcatgatattccaaattggaaaaaacagagcgatct
actaaaaacaatgttggctgataaaaaatatcaagaagcagcaactcgtttagctgatat
actaaacaatcaaccaataagccctcgagaattaatgttaaagcatgctgaaaatgcagc
acgttttggtaaaattccatcattgacgccttttgcaaaagatatgggattcatcgaatt
ctacaatattgacttgattatctactctgtttcgttcactcttttcgcaatttacgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGTCCATCTTTCCACTTGGTTT 118 637 1077 Antisense
CTCAACAGTCTCTCCTAGCTGATAA 627 227 1103 Antisense
GGAACTAGCATACTCTGCGAAACCA 315 529 1173 Antisense
AACCAGCAATCGTGACTCCACTTTT 130 147 1193 Antisense
ACTTTTTGCGGACCAACCCAGCAAT 254 103 1212 Antisense
GTACTTTCTAAGCATGATATTCCAA 681 459 1270 Antisense
ATCAAGAAGCAGCAACTCGTTTAGC 589 25 1346 Antisense
ACAATCAACCAATAAGCCCTCGAGA 675 113 1382 Antisense
ATTCCATCATTGACGCCTTTTGCAA 701 7 1450 Antisense
GACTTGATTATCTACTCTGTTTCGT 572 371 1507 Antisense
GTTCACTCTTTTCGCAATTTACGTA 229 445 1530 Antisense
Sequence Source Affymetrix Proprietary Database