[Home] | [Total List]

[191062_s_at]

Description K04F10.4D /REP_DB=WormBase Gene ID /WP=CE11734 /GEN=bli-4 /TR=O44762 /GB=AAB96754.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=endoprotease
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 13      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 51      6grp_total > 13      4grp_total > 48      6grp_highest_sub > De      6grp_cgc > 40      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 345
(-3)
P 		409.5
(2.4)
P 		398.7
(1.5)
P 		416.5
(3)
P 		72
B 381.1
(1.3)
P 		389.9
(2.1)
P 		400.2
(3)
P 		334.2
(-3)
P 		66
C 382
(-2.4)
P 		410.2
(-0.1)
P 		448.6
(3)
P 		374.3
(-3)
P 		74
avr 369.4
(-3) 		403.2
(1.4) 		415.8
(3) 		375
(-2.3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 615
(3)
P 		576.3
(1.9)
P 		554.4
(1.3)
P 		419.1
(-2.6)
P 		470.6
(-1.1)
P 		403.9
(-3)
P 		211
B 611.3
(2.5)
P 		620.3
(2.7)
P 		521.9
(-0.1)
P 		629.2
(3)
P 		433.3
(-2.6)
P 		421.1
(-3)
P 		208
C 555.9
(1.2)
P 		573.1
(1.9)
P 		467.4
(-2.3)
P 		600.6
(3)
P 		467.7
(-2.3)
P 		450.1
(-3)
P 		151
avr 594.1
(3) 		589.9
(2.9) 		514.6
(0.2) 		549.6
(1.4) 		457.2
(-1.9) 		425
(-3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 125.6
(3)
P 		88.9
(-0.4)
P 		104.2
(1)
P 		61
(-3)
P 		65
B 121.5
(3)
P 		96.3
(-0)
P 		92.7
(-0.4)
P 		71.2
(-3)
P 		50
C 126.4
(1.1)
P 		117.9
(0.5)
P 		156.4
(3)
P 		63.1
(-3)
P 		93
avr 124.5
(3) 		101
(0.6) 		117.8
(2.3) 		65.1
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 113.4
(-2.2)
P 		205
(3)
P 		120.7
(-1.7)
P 		106.3
(-2.6)
P 		142
(-0.5)
P 		98.3
(-3)
P 		107
B 212.7
(3)
P 		206.5
(2.6)
P 		126.7
(-3)
P 		166.7
(-0.2)
P 		176
(0.4)
P 		157
(-0.9)
P 		86
C 206
(3)
P 		174.9
(0.9)
P 		119
(-3)
P 		120.8
(-2.9)
P 		151.3
(-0.8)
P 		150.7
(-0.8)
P 		87
avr 177.4
(1.5) 		195.5
(3) 		122.1
(-3) 		131.3
(-2.2) 		156.4
(-0.2) 		135.3
(-1.9) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191062_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1787
Sequence Type Exemplar sequence
Representative Public ID K04F10.4D NCBI
Target Description K04F10.4D /REP_DB=WormBase Gene ID /WP=CE11734 /GEN=bli-4 /TR=O44762 /GB=AAB96754.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=endoprotease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026372 NCBI Caenorhabditis elegans K04F10.4d (endoprotease) mRNA, complete cds. 11/11 None
GENEFINDER00000027825 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6360824:6364593:1 11/11 None
SNAP00000027820 ENSEMBL cdna:SNAP chromosome:CEL140:I:6362867:6364593:1 11/11 None
K04F10.4d ENSEMBL cdna:known chromosome:CEL140:I:6350572:6364813:1 gene:K04F10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172333 6 1 NM_001026369 175669_at (11)
NM_001026370 175666_s_at (11)
NM_001026371 191107_s_at (11)
NM_001026372 172006_x_at (11), 191062_s_at (11), 191107_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6350500-6364522(+) 100.0 100.0
Public Domain and Genome References
Ensembl K04F10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96754 Blistered cuticle protein 4, isoform d [Caenorhabditis elegans] ref|NP_001021543.1| K04F10.4d [Caenorhabditis elegans] pir||D87803 protein bli-4D [imported] - Caenorhabditis elegans 0.0
blast P51559 Endoprotease bli-4 precursor (Blisterase) (Blistered cuticle protein 4) 0.0
blast AAB96757 Blistered cuticle protein 4, isoform c [Caenorhabditis elegans] ref|NP_001021542.1| K04F10.4c [Caenorhabditis elegans] 0.0
blast AAB96754 Blistered cuticle protein 4, isoform d [Caenorhabditis elegans] ref|NP_001021543.1| K04F10.4d [Caenorhabditis elegans] pir||D87803 protein bli-4D [imported] - Caenorhabditis elegans 1.0E-145
blast T37314 probable kexin (EC 3.4.21.61) - Caenorhabditis elegans (fragment) gb|AAA98752.1| endoprotease 1.0E-144
blast P51559 Endoprotease bli-4 precursor (Blisterase) (Blistered cuticle protein 4) 1.0E-144
blast AAB96754 Blistered cuticle protein 4, isoform d [Caenorhabditis elegans] ref|NP_001021543.1| K04F10.4d [Caenorhabditis elegans] pir||D87803 protein bli-4D [imported] - Caenorhabditis elegans 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR002884 EMBL-EBI Peptidase S8B, proprotein convertase, P domain 2.9E-70
Pfam IPR000209 EMBL-EBI Peptidase S8 and S53, subtilisin, kexin, sedolisin 2.2E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021543.1 1 873-892
K04F10.4d 1 873-892
GENEFINDER00000027825 1 388-407
SNAP00000027820 1 206-225
Sequence
Target Sequence 
>C. ELEGANS:191062_S_AT
gacggatattacatcaacgctgttggaaaatgtgatctttgcgactcctcatgcgaaact
tgcaccgctcctggtccaatgagctgtgagaaatgttcaaaaggttatggtaaaggatcg
attggatactgtagaccgtgttgtcctgaaggatcaacaaagagttggcaatgtgaggac
tgctccaagccggatcctacacttttgattgattctaataaatcatctggatttggattg
atgttctggattgtagttagtttgattgcggcttgtggaatctgtgcctgtaaaaagtgt
gcaagtgagacgaaaagctcaaacgtagaatatgcgccgcttgctcaatataatgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGATATTACATCAACGCTGTTG 622 375 2398 Antisense
GAAAATGTGATCTTTGCGACTCCTC 218 353 2423 Antisense
TGCGACTCCTCATGCGAAACTTGCA 403 581 2437 Antisense
ACCGCTCCTGGTCCAATGAGCTGTG 552 89 2461 Antisense
GGATACTGTAGACCGTGTTGTCCTG 277 507 2521 Antisense
GACCGTGTTGTCCTGAAGGATCAAC 102 383 2531 Antisense
GATCCTACACTTTTGATTGATTCTA 227 415 2590 Antisense
GGATTTGGATTGATGTTCTGGATTG 97 511 2626 Antisense
GTAGTTAGTTTGATTGCGGCTTGTG 402 451 2650 Antisense
GCGGCTTGTGGAATCTGTGCCTGTA 136 293 2665 Antisense
TGCGCCGCTTGCTCAATATAATGCC 243 585 2730 Antisense
Sequence Source Affymetrix Proprietary Database