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[191061_at] G-protein coupled receptor

Description F13D2.3 /REP_DB=WormBase Gene ID /WP=CE03195 /TR=Q19397 /GB=CAA90602.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 94      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 103.7
(3)
P 		63.1
(0)
A 		21.7
(-3)
A 		102.6
(2.9)
P 		82
B 110.5
(0.5)
A 		97.7
(-0.6)
A 		68.5
(-3)
A 		140.1
(3)
P 		72
C 87.1
(0.2)
P 		46.7
(-2.1)
A 		30.2
(-3)
A 		138
(3)
P 		108
avr 100.4
(1.2) 		69.2
(-1) 		40.1
(-3) 		126.9
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 11.7
(-3)
A 		44.1
(-0.5)
A 		67.4
(1.3)
A 		42.8
(-0.6)
A 		90
(3)
A 		69.9
(1.5)
A 		78
B 71.8
(3)
P 		63.8
(1.8)
A 		31.1
(-3)
A 		59.1
(1.1)
A 		59.7
(1.2)
P 		46
(-0.8)
A 		41
C 51.3
(0.5)
A 		79.1
(3)
A 		12.2
(-3)
A 		62.7
(1.5)
A 		76.1
(2.7)
A 		56.5
(1)
M 		67
avr 44.9
(-1.8) 		62.3
(1) 		36.9
(-3) 		54.9
(-0.2) 		75.3
(3) 		57.5
(0.2) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 37.8
(3)
P 		13.7
(-1.5)
A 		5.7
(-3)
A 		15
(-1.3)
P 		32
B 35.2
(3)
A 		24.1
(-0.5)
A 		15.9
(-3)
A 		29.9
(1.4)
P 		19
C 28.8
(3)
P 		13.4
(-2)
A 		10.5
(-3)
A 		23.3
(1.2)
P 		18
avr 33.9
(3) 		17.1
(-1.3) 		10.7
(-3) 		22.7
(0.1) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.1
(-3)
A 		15.7
(0.3)
A 		14.7
(0)
A 		10.9
(-0.9)
A 		27.1
(3)
A 		17
(0.6)
A 		25
B 25
(3)
P 		21.2
(1.7)
A 		7.6
(-3)
A 		15.7
(-0.2)
A 		24.2
(2.7)
P 		17.2
(0.3)
A 		17
C 19
(1.4)
A 		24.1
(2.9)
A 		3.1
(-3)
A 		12.6
(-0.3)
A 		24.6
(3)
A 		18.9
(1.4)
M 		22
avr 15.4
(-0.5) 		20.3
(1.2) 		8.5
(-3) 		13.1
(-1.4) 		25.3
(3) 		17.7
(0.3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16348
Sequence Type Exemplar sequence
Representative Public ID F13D2.3 NCBI
Target Description F13D2.3 /REP_DB=WormBase Gene ID /WP=CE03195 /TR=Q19397 /GB=CAA90602.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077465 NCBI Caenorhabditis elegans F13D2.3 (F13D2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000018366 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11185735:11187394:1 11/11 None
F13D2.3 ENSEMBL cdna:known chromosome:CEL140:X:11185735:11187394:1 gene:F13D2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018361 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11185734-11187394(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl F13D2.3
Entrez Gene 184414 Entrez gene
SwissProt Q19397 EMBL-EBI
WormBase CE33996 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90602 Hypothetical protein F13D2.3 [Caenorhabditis elegans] ref|NP_509866.2| F13D2.3 [Caenorhabditis elegans] 0.0
blast CAE70689 Hypothetical protein CBG17406 [Caenorhabditis briggsae] 1.0E-148
blast CAB60305 Hypothetical protein Y105C5A.23 [Caenorhabditis elegans] ref|NP_502887.1| Y105C5A.23 [Caenorhabditis elegans] 9.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.4E-9
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.2E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509866.2 7 20-42,72-94,109-131,151-169,212-231,313-335,355-374
F13D2.3 7 20-42,72-94,109-131,151-169,212-231,313-335,355-374
GENEFINDER00000018366 7 20-42,72-94,109-131,151-169,212-231,313-335,355-374
Sequence
Target Sequence 
>C. ELEGANS:191061_AT
aacttttgctccatgctctatgaagggtaccatcaagcaatggcattctggttgccctta
agcataacaattgcttcctacgttcgcatgatgagcaggcttattccattttggccgttc
acagtgctcaaccactatgaagacgagcgacaacaaacactatgtacgattttctggagc
aaaattagtgagaaaatacgaagcttcttctgcgtaaccatttttcgacggaaaagctat
gcatctcagcaatcagtgagaggtactacaccttttttcattgtagatgtatttttaacg
ttttttttccgatatacttactgcaaaaaatttgaaatcataattttttttacagttcca
ttggctgaaacaatacgtcatccaccaactacagctcttcgacgacaactaggcacaaca
gtatttaaaaatgcttgtgcaataattgtgacccatattattctttggctcccgtataat
attatcagtttgtcaagattcgtaaacgaaggtttttacgagaccatttctcaaaatggc
ggaaatcttttcgagctccttattctgctcagctcgtttttgaatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTTGCTCCATGCTCTATGAAG 362 139 667 Antisense
GCAATGGCATTCTGGTTGCCCTTAA 689 321 703 Antisense
ATTGCTTCCTACGTTCGCATGATGA 704 5 736 Antisense
GAGCAGGCTTATTCCATTTTGGCCG 87 389 759 Antisense
ATTTTGGCCGTTCACAGTGCTCAAC 193 13 774 Antisense
ACGAAGCTTCTTCTGCGTAACCATT 631 53 864 Antisense
GGCTGAAACAATACGTCATCCACCA 106 541 1029 Antisense
GCTCTTCGACGACAACTAGGCACAA 625 299 1060 Antisense
GACCCATATTATTCTTTGGCTCCCG 526 381 1116 Antisense
TTTTCGAGCTCCTTATTCTGCTCAG 591 677 1214 Antisense
TCTGCTCAGCTCGTTTTTGAATCCA 375 609 1230 Antisense
Sequence Source Affymetrix Proprietary Database