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[191060_at] Transthyretin-like family

Description T07C12.7 /REP_DB=WormBase Gene ID /WP=CE06389 /TR=Q22285 /GB=CAA98286.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 38      6grp_total > 73      4grp_total > 61      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4785
1 2 3 4 range
A 5396.1
(3)
P 		4432.2
(1.7)
P 		4540.6
(1.9)
P 		781.8
(-3)
P 		4614
B 5561
(3)
P 		4912.6
(2.2)
P 		4881.5
(2.1)
P 		825.3
(-3)
P 		4736
C 5468.5
(3)
P 		4467.7
(1.7)
P 		4476.3
(1.7)
P 		775.6
(-3)
P 		4693
avr 5475.2
(3) 		4604.2
(1.9) 		4632.8
(1.9) 		794.2
(-3) 		4681

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5651
1 2 3 4 5 6 range
A 3609.5
(-3)
P 		3602.2
(-3)
P 		6477.8
(1.5)
P 		7406.1
(3)
P 		6640.6
(1.8)
P 		4412.9
(-1.7)
P 		3804
B 3488.6
(-3)
P 		3846
(-2.5)
P 		5749.1
(0.5)
P 		7400.2
(3)
P 		6053.4
(0.9)
P 		4304.1
(-1.7)
P 		3912
C 3371.3
(-3)
P 		4104.9
(-2.2)
P 		5509.7
(-0.7)
P 		9022.6
(3)
P 		6402.1
(0.2)
P 		5009.2
(-1.3)
P 		5651
avr 3489.8
(-3) 		3851
(-2.5) 		5912.2
(0.3) 		7943
(3) 		6365.4
(0.9) 		4575.4
(-1.5) 		4453
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1850
1 2 3 4 range
A 1964.7
(3)
P 		962.1
(-0.3)
P 		1187
(0.5)
P 		114.4
(-3)
P 		1850
B 1773.3
(3)
P 		1213.3
(0.9)
P 		1131.2
(0.6)
P 		175.9
(-3)
P 		1597
C 1810.2
(3)
P 		1284.5
(1.1)
P 		1560.1
(2.1)
P 		130.8
(-3)
P 		1679
avr 1849.4
(3) 		1153.3
(0.6) 		1292.8
(1) 		140.4
(-3) 		1709

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1794
1 2 3 4 5 6 range
A 665.4
(-3)
P 		1281.1
(-0.2)
P 		1410.7
(0.3)
P 		1878.4
(2.4)
P 		2003.9
(3)
P 		1074.4
(-1.2)
P 		1339
B 1213.9
(-3)
P 		1280.2
(-2.7)
P 		1396.1
(-2.1)
P 		1960.1
(0.6)
P 		2459.4
(3)
P 		1605
(-1.1)
P 		1246
C 1249.6
(-3)
P 		1252.5
(-3)
P 		1402.3
(-1.9)
P 		1814.4
(1.1)
P 		2071.6
(3)
P 		1676.9
(0.1)
P 		822
avr 1043
(-3) 		1271.3
(-1.8) 		1403
(-1.1) 		1884.3
(1.4) 		2178.3
(3) 		1452.1
(-0.8) 		1135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12074
Sequence Type Exemplar sequence
Representative Public ID T07C12.7 NCBI
Target Description T07C12.7 /REP_DB=WormBase Gene ID /WP=CE06389 /TR=Q22285 /GB=CAA98286.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073160(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073160 NCBI Caenorhabditis elegans T07C12.7 (T07C12.7) mRNA, complete cds. 11/11 None
SNAP00000001529 ENSEMBL cdna:SNAP chromosome:CEL140:V:9953817:9954637:1 11/11 None
GENEFINDER00000001536 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9953817:9959465:1 11/11 None
T07C12.7.1 ENSEMBL cdna:known chromosome:CEL140:V:9953808:9954738:1 gene:T07C12.7 11/11 None
T07C12.7.2 ENSEMBL cdna:known chromosome:CEL140:V:9953815:9954696:1 gene:T07C12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9953816-9954637(+) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl T07C12.7
Entrez Gene 179384 Entrez gene
SwissProt Q22285 EMBL-EBI
WormBase CE06389 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98287 Hypothetical protein T07C12.8 [Caenorhabditis elegans] ref|NP_505562.1| T07C12.8 [Caenorhabditis elegans] 0.0
blast CAE72286 Hypothetical protein CBG19414 [Caenorhabditis briggsae] 0.0
blast CAA98286 Hypothetical protein T07C12.7 [Caenorhabditis elegans] ref|NP_505561.1| T07C12.7 [Caenorhabditis elegans] sp|Q22285|YFMO_CAEEL Hypothetical UPF0205 protein T07C12.7 in chromosome V precursor 1.0E-79
blast CAA98286 Hypothetical protein T07C12.7 [Caenorhabditis elegans] ref|NP_505561.1| T07C12.7 [Caenorhabditis elegans] sp|Q22285|YFMO_CAEEL Hypothetical UPF0205 protein T07C12.7 in chromosome V precursor 2.0E-79
blast CAE72285 Hypothetical protein CBG19413 [Caenorhabditis briggsae] 2.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 3.1E-68
Sequence
Target Sequence 
>C. ELEGANS:191060_AT
aagttgttcgtcttactgattgcccttctcgggcttaccgcagccatgcgtgatcagtcg
attgcagtaaagggacgccttctgtgtgggaatggaccagcagccaatgttcgtgtcaag
ttatgggaagaggatactggaccagacccggatgatctccttgaccaaggttataccgat
gctaatggtgaatttagtcttcaaggaggtactgctgagttgactccaattgatccagta
ttcaaagtgtaccacaaatgtgatgattcgaagctcaagccaggtgctcgcaaggtcaaa
ctcgcacttccgaaaagctacatcactagcggaaaagtggccaagaaaacgtttgacatc
ggagtgctcaacctcgaaacagtttttgctaaggaagagcgtgagcttcttgtatccaga
cgtcgccgagggggtttcaatgccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGTTCGTCTTACTGATTGCCC 46 157 19 Antisense
GCAGCCATGCGTGATCAGTCGATTG 341 313 58 Antisense
GACGCCTTCTGTGTGGGAATGGACC 495 381 92 Antisense
GGACCAGCAGCCAATGTTCGTGTCA 468 523 112 Antisense
GATACTGGACCAGACCCGGATGATC 701 421 151 Antisense
TTCGAAGCTCAAGCCAGGTGCTCGC 601 693 285 Antisense
CAAGGTCAAACTCGCACTTCCGAAA 94 175 309 Antisense
GAAAACGTTTGACATCGGAGTGCTC 235 355 363 Antisense
CGGAGTGCTCAACCTCGAAACAGTT 587 243 378 Antisense
GCGTGAGCTTCTTGTATCCAGACGT 189 293 417 Antisense
TCGCCGAGGGGGTTTCAATGCCGAT 564 595 441 Antisense
Sequence Source Affymetrix Proprietary Database