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[191059_at] 7TM chemoreceptor, srh family

Description W03F9.6 /REP_DB=WormBase Gene ID /WP=CE14534 /GEN=srh-82 /TR=O16993 /GB=AAG24203.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 20      4grp_total > 05      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 22.8
(-3)
A 		36.1
(-0.4)
A 		38.1
(0)
A 		53
(3)
M 		30
B 36.8
(3)
A 		22.7
(-2.8)
A 		22.3
(-3)
A 		35.5
(2.5)
A 		15
C 36.9
(0.6)
P 		6.6
(-3)
A 		16.8
(-1.8)
A 		56.8
(3)
A 		50
avr 32.2
(-0.7) 		21.8
(-3) 		25.7
(-2.1) 		48.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 30
(0.3)
A 		22.9
(-0.8)
A 		48.4
(3)
A 		19.8
(-1.2)
A 		25.2
(-0.4)
A 		7.7
(-3)
A 		41
B 8.9
(-3)
A 		35.8
(3)
A 		32.5
(2.3)
A 		20.3
(-0.5)
A 		13.5
(-2)
A 		27.7
(1.2)
A 		27
C 9.5
(-2.9)
A 		39.8
(3)
A 		20.6
(-0.7)
A 		19.4
(-1)
A 		8.9
(-3)
A 		18.6
(-1.1)
A 		31
avr 16.1
(-2.9) 		32.8
(2.7) 		33.8
(3) 		19.8
(-1.7) 		15.9
(-3) 		18
(-2.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.3
(-1.6)
A 		7.8
(-3)
A 		10
(3)
A 		7.8
(-3)
M 		2
B 11.7
(3)
A 		5.6
(-2.6)
A 		5.2
(-3)
A 		7.6
(-0.8)
A 		7
C 12.2
(3)
P 		1.9
(-3)
A 		5.9
(-0.7)
A 		9.6
(1.5)
A 		10
avr 10.7
(3) 		5.1
(-3) 		7
(-1) 		8.3
(0.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.5
(-0.5)
A 		8.2
(1.4)
A 		10.5
(3)
A 		5
(-0.8)
A 		7.6
(1)
A 		1.9
(-3)
A 		9
B 3.1
(-3)
A 		11.9
(3)
A 		7.9
(0.3)
A 		5.4
(-1.4)
A 		5.5
(-1.4)
A 		10.3
(1.9)
A 		9
C 3.5
(-2.6)
A 		12.1
(3)
A 		5.2
(-1.5)
A 		3.9
(-2.3)
A 		2.9
(-3)
A 		6.2
(-0.8)
A 		9
avr 4
(-3) 		10.7
(3) 		7.9
(0.5) 		4.8
(-2.3) 		5.3
(-1.8) 		6.1
(-1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14828
Sequence Type Exemplar sequence
Representative Public ID W03F9.6 NCBI
Target Description W03F9.6 /REP_DB=WormBase Gene ID /WP=CE14534 /GEN=srh-82 /TR=O16993 /GB=AAG24203.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070743 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-82) (srh-82) mRNA, complete cds. 11/11 None
GENEFINDER00000001175 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:144144:146737:1 9/11 None
W03F9.6 ENSEMBL cdna:known chromosome:CEL140:V:145022:146759:1 gene:W03F9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001166 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:145021-146759(+) 97.23 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-82
Ensembl W03F9.6
Entrez Gene 259811 Entrez gene
SwissProt O16993 EMBL-EBI
WormBase CE14534 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503144 Serpentine Receptor, class H family member (srh-82) [Caenorhabditis elegans] gb|AAG24203.1| Serpentine receptor, class h protein 82 [Caenorhabditis elegans] 0.0
blast NP_503144 Serpentine Receptor, class H family member (srh-82) [Caenorhabditis elegans] gb|AAG24203.1| Serpentine receptor, class h protein 82 [Caenorhabditis elegans] 1.0E-153
blast AAN73869 Serpentine receptor, class h protein 88 [Caenorhabditis elegans] ref|NP_503807.1| Serpentine Receptor, class H family member (srh-88) [Caenorhabditis elegans] 1.0E-116
blast AAG24157 Serpentine receptor, class h protein 87 [Caenorhabditis elegans] ref|NP_503800.1| Serpentine Receptor, class H family member (srh-87) [Caenorhabditis elegans] 1.0E-116
blast AAG24157 Serpentine receptor, class h protein 87 [Caenorhabditis elegans] ref|NP_503800.1| Serpentine Receptor, class H family member (srh-87) [Caenorhabditis elegans] 5.0E-99
blast AAN73869 Serpentine receptor, class h protein 88 [Caenorhabditis elegans] ref|NP_503807.1| Serpentine Receptor, class H family member (srh-88) [Caenorhabditis elegans] 8.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.4E-27
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.2E-12
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503144.1 7 30-52,65-87,107-129,150-172,212-234,255-277,292-314
W03F9.6 7 30-52,65-87,107-129,150-172,212-234,255-277,292-314
GENEFINDER00000001175 11 30-52,79-101,114-136,140-162,182-204,233-255,268-290,310-332,353-375,421-443,460-482
Sequence
Target Sequence 
>C. ELEGANS:191059_AT
tctacttggtctatcctatactctatccatgcttctttttattccagaagaccaagaagc
tgctcttcttcaaatactgcgccaaattctatgtccgacgaaagagtttttcacggcttc
tggggtatatgtagtgtgtattgatgagggttatatcaagtttttggcacttttcactgt
attgggaactttatcggaaatttgccaaatggcattttttgtcttgtgctgctcatatta
tctatttttttcaaaaagttcattcacttcaaagaagactagaaaacttcaaatcgcgtt
ttttgcaagtatcattttacaaatttctattccaattacttttctgttgcccactttttt
ctacttgggattttcagtgggtttcaaatattacaatcaagcccttaccaatttgtcagt
tcttcatgcatccctccatggtttgatatccacttttgtagttttaatcatccataaacc
ataccggcaatttattatcttaatcttcaagtcgccaagtgtagttcacaaggaatcggt
gacaactatgaggaaaatgaacgggctgacaagccgtgttacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACTTGGTCTATCCTATACTCTA 199 613 483 Antisense
CTATCCATGCTTCTTTTTATTCCAG 263 225 505 Antisense
AGCTGCTCTTCTTCAAATACTGCGC 191 81 540 Antisense
TACTGCGCCAAATTCTATGTCCGAC 211 647 557 Antisense
GTTTTTCACGGCTTCTGGGGTATAT 573 447 588 Antisense
CATTTTTTGTCTTGTGCTGCTCATA 621 215 695 Antisense
TTCCAATTACTTTTCTGTTGCCCAC 441 699 812 Antisense
TGTTGCCCACTTTTTTCTACTTGGG 142 561 827 Antisense
AATTTGTCAGTTCTTCATGCATCCC 64 175 892 Antisense
ATGCATCCCTCCATGGTTTGATATC 278 43 908 Antisense
GAACGGGCTGACAAGCCGTGTTACC 444 347 1041 Antisense
Sequence Source Affymetrix Proprietary Database