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[191058_at]

Description K04D7.2 /REP_DB=WormBase Gene ID /WP=CE06091 /CHR=4 /FEA=Sanger Annotation /DEF=TAT binding homolog 4 like (HINXTON) SW:P54815 protein_id:CAA93516.1
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 36      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 73      6grp_total > 46      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 660.9
(3)
P 		479.6
(-2)
P 		442.5
(-3)
P 		475.8
(-2.1)
P 		218
B 647.6
(3)
P 		490.8
(-0.3)
P 		419.2
(-1.9)
P 		366
(-3)
P 		282
C 572.9
(3)
P 		366.5
(-3)
P 		482.4
(0.4)
P 		404.1
(-1.9)
P 		206
avr 627.1
(3) 		445.6
(-2.1) 		448
(-2.1) 		415.3
(-3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 481.3
(0.3)
P 		498.4
(1.1)
P 		540.4
(3)
P 		534
(2.7)
P 		410.4
(-3)
P 		506.1
(1.4)
P 		130
B 525.9
(0.8)
P 		590.4
(3)
P 		417.3
(-3)
P 		447
(-2)
P 		477.9
(-0.9)
P 		537.4
(1.2)
P 		173
C 554.2
(2.8)
P 		559.4
(3)
P 		504.9
(0.5)
P 		428.7
(-3)
P 		488.6
(-0.3)
P 		549.4
(2.5)
P 		131
avr 520.5
(1.1) 		549.4
(3) 		487.5
(-1.1) 		469.9
(-2.3) 		459
(-3) 		531
(1.8) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 240.6
(3)
P 		104.1
(-1.8)
P 		115.7
(-1.4)
P 		69.7
(-3)
P 		171
B 206.5
(3)
P 		121.2
(-1)
P 		97.1
(-2.1)
P 		78
(-3)
P 		129
C 189.6
(3)
P 		105.4
(-1.2)
P 		168.1
(1.9)
P 		68.1
(-3)
P 		122
avr 212.2
(3) 		110.2
(-1.4) 		127
(-0.6) 		71.9
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 88.7
(-3)
P 		177.3
(3)
P 		117.7
(-1)
P 		135.4
(0.2)
P 		123.9
(-0.6)
P 		123.2
(-0.7)
P 		89
B 183
(1.9)
P 		196.5
(2.8)
P 		101.3
(-3)
P 		118.4
(-2)
P 		194.2
(2.6)
P 		200.4
(3)
P 		99
C 205.4
(3)
P 		170.7
(1.3)
P 		128.5
(-0.9)
P 		86.2
(-3)
P 		158.1
(0.6)
P 		183.9
(1.9)
P 		119
avr 159
(1) 		181.5
(3) 		115.8
(-2.8) 		113.3
(-3) 		158.7
(1) 		169.2
(1.9) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9071
Sequence Type Exemplar sequence
Representative Public ID K04D7.2 NCBI
Target Description K04D7.2 /REP_DB=WormBase Gene ID /WP=CE06091 /CHR=4 /FEA=Sanger Annotation /DEF=TAT binding homolog 4 like (HINXTON) SW:P54815 protein_id:CAA93516.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069459(11), NM_069460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069459 NCBI Caenorhabditis elegans K04D7.2a (K04D7.2) mRNA, complete cds. 11/11 None
NM_069460 NCBI Caenorhabditis elegans K04D7.2b (K04D7.2) mRNA, complete cds. 11/11 None
SNAP00000009541 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10177941:10179912:1 11/11 None
GENEFINDER00000009554 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10177941:10179912:1 11/11 None
K04D7.2a ENSEMBL cdna:known chromosome:CEL140:IV:10177939:10180257:1 gene:K04D7.2 11/11 None
K04D7.2b ENSEMBL cdna:known chromosome:CEL140:IV:10177941:10179912:1 gene:K04D7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10177946-10179918(+) 100.0 100.0
Public Domain and Genome References
Ensembl K04D7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93516 Hypothetical protein K04D7.2a [Caenorhabditis elegans] ref|NP_501860.1| K04D7.2a [Caenorhabditis elegans] sp|P54815|MSP1_CAEEL MSP1 protein homolog 0.0
blast T23311 hypothetical protein K04D7.2 - Caenorhabditis elegans 0.0
blast CAC42312 Hypothetical protein K04D7.2b [Caenorhabditis elegans] ref|NP_501861.1| K04D7.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.7E-73
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.7E-73
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501860.1 1 7-29
NP_501861.1 1 7-29
K04D7.2a 1 7-29
K04D7.2b 1 7-29
SNAP00000009541 1 7-29
GENEFINDER00000009554 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:191058_AT
gcagctggatgccgatttatcaatcttcaagtgtcaaacctaactgataaatggtacgga
gagtctcaaaaacttgcggccgctgttttctctgttgctcaaaagtttcaaccaacaatt
attttcattgatgaaattgattcgttcctccgagacagacaatctcatgatcacgaatca
acagcaatgatgaaggcacaattcatgacattatgggatggattttctagttctggagat
caaatcattgttatgggagctacaaatcgtccacgagacgttgatgctgctattctacgc
agaatgactgcaagattccaagttccagtaccaaatgccaagcaaagaagtcagattctt
aatgtgattctcaggaatgaaaagatcaataatactgtaaatctcggagaaatcgcacag
gcagcagaaggtcttagtggaagtgatttgaaagaggtttgtcgtcttgctcttctcgct
cgagcaaaagctactgtagcttctggaggttccgtaaatcaacttcttccattggaacag
tccgattttgagtcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCTGGATGCCGATTTATCAATC 683 313 475 Antisense
AGAGTCTCAAAAACTTGCGGCCGCT 88 69 534 Antisense
TTGATTCGTTCCTCCGAGACAGACA 236 705 611 Antisense
GGGAGCTACAAATCGTCCACGAGAC 138 495 729 Antisense
GACGTTGATGCTGCTATTCTACGCA 127 379 751 Antisense
TGCAAGATTCCAAGTTCCAGTACCA 375 577 783 Antisense
ATCTCGGAGAAATCGCACAGGCAGC 685 31 875 Antisense
AAGAGGTTTGTCGTCTTGCTCTTCT 621 151 926 Antisense
TCTTGCTCTTCTCGCTCGAGCAAAA 290 619 939 Antisense
CTACTGTAGCTTCTGGAGGTTCCGT 112 225 965 Antisense
GGAACAGTCCGATTTTGAGTCAGCA 543 527 1008 Antisense
Sequence Source Affymetrix Proprietary Database