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[191057_s_at] UDP-glucuronysltransferase

Description ZC455.4 /REP_DB=WormBase Gene ID /WP=CE24704 /TR=Q23334 /GB=CAA99955.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 82      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 72      6grp_total > 73      4grp_total > 57      6grp_highest_sub > 04_05      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 549
1 2 3 4 range
A 143.9
(-2.4)
P 		637.4
(3)
P 		611.8
(2.7)
P 		88
(-3)
P 		549
B 163.3
(-2.1)
P 		544.9
(2.9)
P 		555.9
(3)
P 		90.6
(-3)
P 		465
C 226.3
(-1.8)
P 		590.5
(2.7)
P 		618
(3)
P 		125.1
(-3)
P 		493
avr 177.8
(-2.1) 		590.9
(2.9) 		595.2
(3) 		101.2
(-3) 		494

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 520
1 2 3 4 5 6 range
A 111.3
(-3)
P 		291.9
(-0.8)
P 		430
(0.9)
P 		559.3
(2.5)
P 		597.6
(3)
P 		261.5
(-1.1)
P 		486
B 173.8
(-3)
P 		249.3
(-1.8)
P 		499.2
(2.2)
P 		501.6
(2.3)
P 		547.2
(3)
P 		366.8
(0.1)
P 		373
C 117.9
(-3)
P 		323.9
(-0.6)
P 		395.9
(0.2)
P 		631.7
(3)
P 		522
(1.7)
P 		418.3
(0.5)
P 		514
avr 134.3
(-3) 		288.4
(-0.8) 		441.7
(1.3) 		564.2
(3) 		555.6
(2.9) 		348.9
(-0) 		430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 52.4
(-1.4)
P 		138.4
(2.1)
P 		159.9
(3)
P 		12.9
(-3)
P 		147
B 52.1
(-1.3)
P 		134.6
(3)
P 		128.8
(2.7)
P 		19.3
(-3)
P 		115
C 74.9
(-1.3)
P 		169.8
(1.6)
P 		215.4
(3)
P 		21.1
(-3)
P 		194
avr 59.8
(-1.3) 		147.6
(2.2) 		168
(3) 		17.8
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 20.5
(-3)
P 		103.8
(0.1)
P 		93.7
(-0.3)
P 		141.9
(1.6)
P 		180.3
(3)
P 		63.7
(-1.4)
P 		160
B 60.5
(-3)
P 		83
(-2.2)
P 		121.2
(-0.7)
P 		132.9
(-0.3)
P 		222.3
(3)
P 		136.8
(-0.2)
P 		162
C 43.7
(-3)
P 		98.8
(-0.4)
P 		100.8
(-0.3)
P 		127
(1)
P 		168.9
(3)
P 		140
(1.6)
P 		125
avr 41.6
(-3) 		95.2
(-0.8) 		105.2
(-0.4) 		133.9
(0.7) 		190.5
(3) 		113.5
(-0.1) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191057_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14335
Sequence Type Exemplar sequence
Representative Public ID ZC455.4 NCBI
Target Description ZC455.4 /REP_DB=WormBase Gene ID /WP=CE24704 /TR=Q23334 /GB=CAA99955.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073801 NCBI Caenorhabditis elegans ZC455.4 (UDP-glucuronysltransferase) mRNA, complete cds. 11/11 None
SNAP00000034472 ENSEMBL cdna:SNAP chromosome:CEL140:V:12795700:12802783:-1 9/11 None
ZC455.4 ENSEMBL cdna:known chromosome:CEL140:V:12798080:12800744:-1 gene:ZC455.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034480 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12798079-12800667(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronysltransferase
Gene Symbol ugt-6
Ensembl ZC455.4
Entrez Gene 179755 Entrez gene
SwissProt Q23334 EMBL-EBI
WormBase CE24704 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99955 Hypothetical protein ZC455.4 [Caenorhabditis elegans] ref|NP_506202.1| ZC455.4 [Caenorhabditis elegans] 0.0
blast CAA99954 Hypothetical protein ZC455.3 [Caenorhabditis elegans] ref|NP_506203.1| ZC455.3 [Caenorhabditis elegans] 0.0
blast CAA99956 Hypothetical protein ZC455.5 [Caenorhabditis elegans] ref|NP_506201.1| ZC455.5 [Caenorhabditis elegans] 0.0
blast CAA99957 Hypothetical protein ZC455.6a [Caenorhabditis elegans] ref|NP_506200.1| ZC455.6a [Caenorhabditis elegans] 1.0E-174
blast CAE63999 Hypothetical protein CBG08593 [Caenorhabditis briggsae] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.0E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-29
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.2E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506202.1 2 7-29,500-522
ZC455.4 2 7-29,500-522
SNAP00000034472 2 5-27,1313-1335
Sequence
Target Sequence 
>C. ELEGANS:191057_S_AT
taccaaccaatgtacacgtagccaagtggttttcccagagtgccctcttaagtgatcaac
gggttaaccttttcgtaacacatggaggacttggtagtacaatggagttagcacgggcag
caaaaccggcaatagtgattccactgtttgctgatcaaccgggaaatgcaaaaatgatag
aacgacatggatcagtagaaatattttcaaagcttgatattcctaattcgaagaagctca
gcagtttgattcaaaaaatgttaaatacaaaatattatcaacagaatgcaaatcggttag
ccgatacattacgttttcaaccaatcacgccaactgatctgatggtaaaacacgccgaaa
acgccgcacgatttggcaaaatgccaaacttggtacctcatgctaaggatatgggtttct
ttgaatattacaacatcgatattatctttattgtttttttacttgtttggttgcttttct
ctgttgtggcacatgttttctcaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCAACCAATGTACACGTAGCCAA 406 649 1076 Antisense
AGCCAAGTGGTTTTCCCAGAGTGCC 471 83 1095 Antisense
GTTAGCACGGGCAGCAAAACCGGCA 233 429 1182 Antisense
ATAGTGATTCCACTGTTTGCTGATC 650 21 1207 Antisense
GTTAGCCGATACATTACGTTTTCAA 250 357 1371 Antisense
TACGTTTTCAACCAATCACGCCAAC 16 649 1385 Antisense
AATCACGCCAACTGATCTGATGGTA 104 171 1398 Antisense
CGCCGAAAACGCCGCACGATTTGGC 164 255 1428 Antisense
TGCCAAACTTGGTACCTCATGCTAA 26 587 1457 Antisense
GTTGCTTTTCTCTGTTGTGGCACAT 581 439 1545 Antisense
GTTGTGGCACATGTTTTCTCAAAAT 499 437 1558 Antisense
Sequence Source Affymetrix Proprietary Database