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[191056_at] L-carnitine dehydratase

Description ZK892.4 /REP_DB=WormBase Gene ID /WP=CE18469 /TR=SW:Q09618 /GB=CAA88571.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=L-carnitine dehydratase
Cluster 6grp_total > 77      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 4.3
(-3)
A 		10.5
(-1.5)
A 		6.6
(-2.4)
A 		28.7
(3)
A 		24
B 6.7
(2.3)
A 		5.2
(0.3)
A 		2.7
(-3)
A 		7.2
(3)
A 		5
C 6.1
(-0.6)
A 		5.9
(-1.4)
A 		5.5
(-3)
A 		7
(3)
A 		2
avr 5.7
(-2.5) 		7.2
(-1.5) 		4.9
(-3) 		14.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 6.2
(-2.2)
A 		3.7
(-3)
A 		4
(-2.9)
A 		21.8
(3)
A 		7.1
(-1.9)
A 		20.3
(2.5)
A 		18
B 3.7
(-2.8)
A 		5.7
(-1.5)
A 		3.4
(-3)
A 		6
(-1.3)
A 		5.5
(-1.6)
A 		12.4
(3)
A 		9
C 8
(-2.7)
A 		6.2
(-2.9)
A 		10.8
(-2.4)
A 		5.3
(-3)
A 		10.5
(-2.4)
A 		60.9
(3)
A 		56
avr 6
(-2.8) 		5.2
(-3) 		6.1
(-2.8) 		11
(-1.7) 		7.7
(-2.4) 		31.2
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.6
(-3)
A 		2.3
(-1.4)
A 		1.7
(-2.8)
A 		4.2
(3)
A 		3
B 2.1
(3)
A 		1.3
(-0.2)
A 		0.6
(-3)
A 		1.5
(0.6)
A 		2
C 2
(3)
A 		1.7
(0.8)
A 		1.9
(2.3)
A 		1.2
(-3)
A 		1
avr 1.9
(0.3) 		1.8
(-0.3) 		1.4
(-3) 		2.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.1
(-2.7)
A 		1.3
(-2.5)
A 		0.9
(-3)
A 		5.5
(3)
A 		2.1
(-1.4)
A 		4.9
(2.2)
A 		5
B 1.3
(-2.2)
A 		1.9
(-1.3)
A 		0.8
(-3)
A 		1.6
(-1.7)
A 		2.2
(-0.8)
A 		4.6
(3)
A 		4
C 3
(-2.4)
A 		1.9
(-2.8)
A 		2.7
(-2.5)
A 		1.1
(-3)
A 		3.4
(-2.3)
A 		20.4
(3)
A 		19
avr 1.8
(-2.8) 		1.7
(-2.9) 		1.5
(-3) 		2.7
(-2.2) 		2.6
(-2.2) 		10
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3413
Sequence Type Exemplar sequence
Representative Public ID ZK892.4 NCBI
Target Description ZK892.4 /REP_DB=WormBase Gene ID /WP=CE18469 /TR=SW:Q09618 /GB=CAA88571.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=L-carnitine dehydratase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063762 NCBI Caenorhabditis elegans ZK892.4 (ZK892.4) mRNA, complete cds. 11/11 None
SNAP00000002396 ENSEMBL cdna:SNAP chromosome:CEL140:II:10006553:10008000:1 11/11 None
ZK892.4 ENSEMBL cdna:known chromosome:CEL140:II:10006553:10008000:1 gene:ZK892.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10006549-10007997(+) 100.0 100.0
Public Domain and Genome References
Gene Title L-carnitine dehydratase
Ensembl ZK892.4
Entrez Gene 174559 Entrez gene
SwissProt Q09618 EMBL-EBI
WormBase CE32784 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88571 Hypothetical protein ZK892.4 [Caenorhabditis elegans] ref|NP_496163.2| ZK892.4 [Caenorhabditis elegans] sp|Q09618|YS74_CAEEL Hypothetical protein ZK892.4 in chromosome III 0.0
blast CAA88571 Hypothetical protein ZK892.4 [Caenorhabditis elegans] ref|NP_496163.2| ZK892.4 [Caenorhabditis elegans] sp|Q09618|YS74_CAEEL Hypothetical protein ZK892.4 in chromosome III 1.0E-161
blast CAE57310 Hypothetical protein CBG00232 [Caenorhabditis briggsae] 1.0E-158
blast AAA81458 Hypothetical protein C24A3.4 [Caenorhabditis elegans] ref|NP_509517.1| C24A3.4 [Caenorhabditis elegans] 1.0E-157
blast CAE57310 Hypothetical protein CBG00232 [Caenorhabditis briggsae] 1.0E-127
blast AAA81458 Hypothetical protein C24A3.4 [Caenorhabditis elegans] ref|NP_509517.1| C24A3.4 [Caenorhabditis elegans] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR003673 EMBL-EBI L-carnitine dehydratase/bile acid-inducible protein F 4.5E-83
Pfam IPR003673 EMBL-EBI L-carnitine dehydratase/bile acid-inducible protein F 1.6E-91
Sequence
Target Sequence 
>C. ELEGANS:191056_AT
gtatgcttccaacgttctctggagtcaatgcaacacggccatggcctcctgcaaatatgc
tggctgattttgctggcggtggtttgtcagccgcatttggaattctgtcagcaatttatg
caagatctcataatggaggcaaaggatgcttgttagactgctcgatgaccgaaggtgttg
cttatttgtcttcgtttgtacagcattactatgaccaaccgaacctgttcactgacaaat
atgcattatttagtggtgaatgtccgatttacaggacatataaaacgaaagatgacaagt
ttgtagcagttggagcagttgagccgaagttctatcaaaatttgttcaaattattgaatg
tagatggacgtgacttgttcgtaaatcccggccaagaatgctgtgtaactccagttttgg
atattcatgaagtcggatcttatggtcagcatgtcgaccgtaatagttttaccaaaacaa
gtagtaattggatcgcaaatccttctcccagagtctggacgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGCTTCCAACGTTCTCTGGAGT 589 455 407 Antisense
CCATGGCCTCCTGCAAATATGCTGG 55 273 445 Antisense
AATATGCTGGCTGATTTTGCTGGCG 125 173 460 Antisense
TGCTGGCGGTGGTTTGTCAGCCGCA 359 583 477 Antisense
AGCCGCATTTGGAATTCTGTCAGCA 533 83 495 Antisense
GATGCTTGTTAGACTGCTCGATGAC 197 413 551 Antisense
TTGTCTTCGTTTGTACAGCATTACT 47 705 592 Antisense
TGACCAACCGAACCTGTTCACTGAC 534 569 618 Antisense
AAATCCCGGCCAAGAATGCTGTGTA 575 117 789 Antisense
CGGATCTTATGGTCAGCATGTCGAC 680 241 840 Antisense
ATCCTTCTCCCAGAGTCTGGACGCA 210 39 905 Antisense
Sequence Source Affymetrix Proprietary Database