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[191055_at] 7TM chemoreceptor, str family

Description C05E4.2 /REP_DB=WormBase Gene ID /WP=CE25757 /GEN=str-20 /TR=O17363 /GB=AAB71271.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 38      4grp_total > 19      6grp_cgc > 09      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 31.3
(-0.8)
A 		20.8
(-1.7)
A 		4.6
(-3)
A 		77.2
(3)
A 		73
B 12.9
(-3)
A 		50.8
(3)
A 		24.7
(-1.1)
A 		40
(1.3)
A 		38
C 47.1
(-0)
A 		52.7
(0.4)
A 		4.8
(-3)
A 		89.8
(3)
A 		85
avr 30.4
(-1) 		41.4
(0.1) 		11.4
(-3) 		69
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 39.9
(3)
A 		3.6
(-3)
A 		9.2
(-2.1)
A 		12.3
(-1.6)
A 		6.5
(-2.5)
A 		32.3
(1.7)
A 		36
B 21.8
(0.8)
A 		28.3
(2.2)
A 		3.1
(-2.9)
A 		2.8
(-3)
A 		32.5
(3)
A 		18.2
(0.1)
A 		30
C 10.2
(-1.7)
A 		36.7
(3)
P 		2.6
(-3)
A 		27.2
(1.3)
A 		12.1
(-1.3)
A 		16
(-0.6)
A 		34
avr 24
(3) 		22.9
(2.7) 		5
(-3) 		14.1
(-0.1) 		17
(0.8) 		22.2
(2.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.4
(3)
A 		4.5
(-1.1)
A 		1.2
(-3)
A 		11.3
(2.9)
A 		10
B 4.1
(-3)
A 		12.5
(3)
A 		5.7
(-1.9)
A 		8.5
(0.1)
A 		8
C 15.6
(3)
A 		15.2
(2.8)
A 		1.7
(-3)
A 		15.1
(2.8)
A 		14
avr 10.4
(2.2) 		10.7
(2.4) 		2.9
(-3) 		11.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 7.4
(2.5)
A 		1.3
(-3)
A 		2
(-2.4)
A 		3.1
(-1.4)
A 		2
(-2.4)
A 		7.9
(3)
A 		7
B 7.6
(0.3)
A 		9.4
(1.2)
A 		0.7
(-3)
A 		0.7
(-3)
A 		13.2
(3)
A 		6.8
(-0.1)
A 		13
C 3.8
(-1.2)
A 		11.2
(3)
P 		0.7
(-3)
A 		5.5
(-0.3)
A 		3.9
(-1.2)
A 		5.4
(-0.3)
A 		11
avr 6.3
(2) 		7.3
(3) 		1.1
(-3) 		3.1
(-1.1) 		6.4
(2.1) 		6.7
(2.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15754
Sequence Type Exemplar sequence
Representative Public ID C05E4.2 NCBI
Target Description C05E4.2 /REP_DB=WormBase Gene ID /WP=CE25757 /GEN=str-20 /TR=O17363 /GB=AAB71271.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070915 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-20) (str-20) mRNA, complete cds. 11/11 None
C05E4.2 ENSEMBL cdna:known chromosome:CEL140:V:756299:757659:1 gene:C05E4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009766 6/11 Cross Hyb Matching Probes None
GENEFINDER00000009777 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:756298-757659(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-20
Ensembl C05E4.2
Entrez Gene 191970 Entrez gene
SwissProt O17363 EMBL-EBI
WormBase CE25757 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71271 Seven tm receptor protein 20 [Caenorhabditis elegans] ref|NP_503316.1| Seven TM Receptor family member (str-20) [Caenorhabditis elegans] 1.0E-178
blast T32342 hypothetical protein C08F1.7 - Caenorhabditis elegans 1.0E-117
blast CAB04010 Hypothetical protein C55A1.5 [Caenorhabditis elegans] ref|NP_506891.1| Seven TM Receptor family member (str-23) [Caenorhabditis elegans] 2.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503316.1 7 20-42,49-71,100-122,143-165,208-230,257-279,289-311
C05E4.2 7 20-42,49-71,100-122,143-165,208-230,257-279,289-311
Sequence
Target Sequence 
>C. ELEGANS:191055_AT
atagctgtatattgttccggttgtgggatattatggggaggatcgatgtaccttttttct
caagttgatgattacgctaaggcttatctcagaggcgaaatgagtataaaatatggaatc
aacattgacaatctggttgcattcacattagttgcctacgacaaggatggtcattttaga
tggtggaattctattgcaaatttcatcttatgcattatcatgtttgctcagtatgcaatt
atgatgttttgtgcagtagttatgtatcggaaaatggaggagaacatgaaaatgatgtct
gaatcactacgcagagtccaccggcagttcttccggacgcttgtcattcaaatcatcgct
ccatccatattcctattttccccgctaacttttatactataccatccgtttttgaattat
gcaatcagttttccatccggcatgtttttgtgtgcaatttctttatttccagccatagat
gcaattgttatcttgactattgtgagagaatatcgaaatgccgtgaaaaaaatcttccgg
tatgcgtgttgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGCTGTATATTGTTCCGGTTGTG 288 23 442 Antisense
GGGAGGATCGATGTACCTTTTTTCT 145 407 477 Antisense
TACGCTAAGGCTTATCTCAGAGGCG 313 649 514 Antisense
TTGACAATCTGGTTGCATTCACATT 607 703 566 Antisense
CATTCACATTAGTTGCCTACGACAA 570 213 581 Antisense
CTGAATCACTACGCAGAGTCCACCG 642 237 740 Antisense
TTCTTCCGGACGCTTGTCATTCAAA 330 685 769 Antisense
TATACTATACCATCCGTTTTTGAAT 377 661 834 Antisense
TTTCCATCCGGCATGTTTTTGTGTG 262 669 871 Antisense
GTGCAATTTCTTTATTTCCAGCCAT 624 481 893 Antisense
AATCTTCCGGTATGCGTGTTGTCGA 335 169 972 Antisense
Sequence Source Affymetrix Proprietary Database