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[191054_at] 7TM chemoreceptor, str family

Description C24B9.1 /REP_DB=WormBase Gene ID /WP=CE25785 /GEN=str-33 /TR=O76437 /GB=AAC19252.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 72      4grp_total > 26      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 2.4
(-3)
A 		5.2
(0.6)
A 		5.5
(1)
A 		7.1
(3)
A 		5
B 3.8
(-2.8)
A 		4.8
(-2.5)
A 		3.3
(-3)
A 		19.9
(3)
A 		17
C 4.1
(-3)
A 		53.2
(2.1)
A 		16.9
(-1.7)
A 		62.1
(3)
A 		58
avr 3.4
(-3) 		21.1
(1) 		8.6
(-1.8) 		29.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 10.1
(-1.4)
A 		2.3
(-3)
A 		32.4
(3)
A 		6
(-2.3)
A 		3.1
(-2.8)
A 		5
(-2.5)
A 		30
B 3.7
(-2.5)
A 		10.8
(-0.7)
A 		4.3
(-2.4)
A 		25.5
(3)
A 		5.6
(-2.1)
A 		1.9
(-3)
A 		24
C 2.2
(-2.9)
A 		5.3
(-2.2)
A 		1.8
(-3)
A 		3
(-2.7)
A 		27.9
(3)
A 		6.7
(-1.9)
A 		26
avr 5.3
(-2.4) 		6.1
(-1.8) 		12.8
(3) 		11.5
(2.1) 		12.2
(2.6) 		4.5
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.9
(-3)
A 		1.1
(-0.6)
A 		1.4
(3)
A 		1
(-1.8)
A 		0
B 1.2
(-2.3)
A 		1.2
(-2.3)
A 		0.8
(-3)
A 		4.2
(3)
A 		3
C 1.4
(-3)
A 		15.3
(3)
A 		5.9
(-1.1)
A 		10.5
(0.9)
A 		14
avr 1.2
(-3) 		5.9
(3) 		2.7
(-1.1) 		5.2
(2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.9
(-2)
A 		0.8
(-3)
A 		7.1
(3)
A 		1.5
(-2.3)
A 		0.9
(-2.9)
A 		1.2
(-2.6)
A 		6
B 1.3
(-2.4)
A 		3.6
(-0.1)
A 		1
(-2.7)
A 		6.8
(3)
A 		2.3
(-1.4)
A 		0.7
(-3)
A 		6
C 0.8
(-2.8)
A 		1.6
(-2.2)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		9
(3)
A 		2.2
(-1.8)
A 		9
avr 1.3
(-3) 		2
(-1.5) 		2.9
(0.4) 		3
(0.6) 		4.1
(3) 		1.4
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15248
Sequence Type Exemplar sequence
Representative Public ID C24B9.1 NCBI
Target Description C24B9.1 /REP_DB=WormBase Gene ID /WP=CE25785 /GEN=str-33 /TR=O76437 /GB=AAC19252.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071340(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071340 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-33) (str-33) mRNA, complete cds. 11/11 None
GENEFINDER00000038287 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2728363:2730070:1 11/11 None
C24B9.1 ENSEMBL cdna:known chromosome:CEL140:V:2728363:2730070:1 gene:C24B9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038281 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2728362-2730070(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-33
Ensembl C24B9.1
Entrez Gene 191974 Entrez gene
SwissProt O76437 EMBL-EBI
WormBase CE25785 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19252 Seven tm receptor protein 33 [Caenorhabditis elegans] ref|NP_503741.1| Seven TM Receptor family member (str-33) [Caenorhabditis elegans] 1.0E-176
blast H89026 protein T08H10.2 [imported] - Caenorhabditis elegans 5.0E-78
blast CAE56780 Hypothetical protein CBG24587 [Caenorhabditis briggsae] 1.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503741.1 7 10-32,45-67,92-114,135-157,205-227,255-277,287-309
C24B9.1 7 10-32,45-67,92-114,135-157,205-227,255-277,287-309
GENEFINDER00000038287 7 10-32,45-67,92-114,135-157,205-227,255-277,287-309
Sequence
Target Sequence 
>C. ELEGANS:191054_AT
ggtttcgcttggagtgcatcagtatatttttgtctattcccggacacctattcatataat
tatataagaacggagtttaaagacgtttataatattggtgtggatcgagtggccattttc
atactagttgcttatgaaaaacacccatcaagtgaagagtataaactgagaccggcaagt
gtaattatgatagctgggaccatctctatactggtaattcaatactcaataatgctgttt
tgtggtgcatcaatgcaccgccaaatgaacgaaaaactcaaaaacttttcacctgataac
caacgacttcaaaagcaatttttcaaaactttactccttcaaatctctgtgccaacagtc
ttgttccacatgccaatatttccggttctactaggcccgttcttcaatttcgaaatatca
gccgagtctggaatcatttacagtctattcagtctgtatccaccaatcgatggacttatt
ataatgaccgttgtcaccgattatagaattgctttaactgaattatttctgggctcgcat
tctggtgcacaggtcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTCGCTTGGAGTGCATCAGTAT 696 505 445 Antisense
TATTTTTGTCTATTCCCGGACACCT 466 661 469 Antisense
GTGGCCATTTTCATACTAGTTGCTT 469 491 553 Antisense
GATAGCTGGGACCATCTCTATACTG 69 425 633 Antisense
TTTTCACCTGATAACCAACGACTTC 105 673 730 Antisense
AAACTTTACTCCTTCAAATCTCTGT 39 127 770 Antisense
GTTCCACATGCCAATATTTCCGGTT 201 441 807 Antisense
TAGGCCCGTTCTTCAATTTCGAAAT 579 649 836 Antisense
ATTCAGTCTGTATCCACCAATCGAT 468 11 891 Antisense
GAATTATTTCTGGGCTCGCATTCTG 416 325 964 Antisense
CTCGCATTCTGGTGCACAGGTCGAA 112 233 978 Antisense
Sequence Source Affymetrix Proprietary Database