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[191053_at] UDP-glucuronysltransferase

Description ZC455.5 /REP_DB=WormBase Gene ID /WP=CE06594 /TR=Q23335 /GB=CAA99956.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster 6grp_total > 77      4grp_total > 11      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 88.6
(-3)
A 		142
(-1.9)
A 		86.7
(-3)
A 		393
(3)
P 		306
B 133.3
(-1.3)
A 		112.2
(-1.6)
A 		21.1
(-3)
A 		410.2
(3)
P 		389
C 93.7
(-3)
A 		117.4
(-2.5)
A 		100.1
(-2.9)
A 		375.1
(3)
P 		281
avr 105.2
(-2.3) 		123.9
(-2) 		69.3
(-3) 		392.8
(3) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 119.5
(0.5)
A 		47
(-2.7)
A 		41.3
(-3)
A 		74.4
(-1.5)
A 		99.6
(-0.4)
A 		174.9
(3)
A 		134
B 52
(-3)
A 		65.7
(-2.1)
A 		56.5
(-2.7)
A 		85.8
(-0.7)
A 		60.6
(-2.4)
A 		140.6
(3)
P 		89
C 52.1
(-3)
A 		93.3
(-0.6)
A 		69.7
(-2)
A 		113.1
(0.6)
A 		71.8
(-1.8)
A 		153.2
(3)
M 		101
avr 74.5
(-1.9) 		68.7
(-2.2) 		55.8
(-3) 		91.1
(-0.9) 		77.3
(-1.7) 		156.2
(3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 32.3
(-1.3)
A 		30.8
(-1.6)
A 		22.7
(-3)
A 		57.5
(3)
P 		35
B 42.5
(-0.3)
A 		27.7
(-1.3)
A 		4.9
(-3)
A 		87.4
(3)
P 		83
C 31
(-3)
A 		33.7
(-2.5)
A 		34.9
(-2.3)
A 		63.3
(3)
P 		32
avr 35.3
(-1.2) 		30.7
(-1.8) 		20.8
(-3) 		69.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 22
(-0.7)
A 		16.7
(-1.6)
A 		9
(-3)
A 		18.9
(-1.2)
A 		30.1
(0.8)
A 		42.6
(3)
A 		34
B 18.1
(-2.3)
A 		21.9
(-1.7)
A 		13.7
(-3)
A 		22.7
(-1.6)
A 		24.6
(-1.3)
A 		52.4
(3)
P 		39
C 19.3
(-2.7)
A 		28.5
(-1.1)
A 		17.7
(-3)
A 		22.7
(-2.1)
A 		23.2
(-2)
A 		51.3
(3)
M 		34
avr 19.8
(-1.9) 		22.4
(-1.5) 		13.5
(-3) 		21.4
(-1.7) 		26
(-0.9) 		48.8
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14225
Sequence Type Exemplar sequence
Representative Public ID ZC455.5 NCBI
Target Description ZC455.5 /REP_DB=WormBase Gene ID /WP=CE06594 /TR=Q23335 /GB=CAA99956.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronysltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073800(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073800 NCBI Caenorhabditis elegans ZC455.5 (UDP-glucuronysltransferase) mRNA, complete cds. 11/11 None
SNAP00000034472 ENSEMBL cdna:SNAP chromosome:CEL140:V:12795700:12802783:-1 11/11 None
GENEFINDER00000034480 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12791787:12803621:-1 11/11 None
ZC455.5 ENSEMBL cdna:known chromosome:CEL140:V:12795636:12797896:-1 gene:ZC455.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12795699-12797896(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronysltransferase
Gene Symbol ugt-4
Ensembl ZC455.5
Entrez Gene 179754 Entrez gene
SwissProt Q23335 EMBL-EBI
WormBase CE06594 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99956 Hypothetical protein ZC455.5 [Caenorhabditis elegans] ref|NP_506201.1| ZC455.5 [Caenorhabditis elegans] 0.0
blast CAE63999 Hypothetical protein CBG08593 [Caenorhabditis briggsae] 0.0
blast CAA99955 Hypothetical protein ZC455.4 [Caenorhabditis elegans] ref|NP_506202.1| ZC455.4 [Caenorhabditis elegans] 0.0
blast CAA99954 Hypothetical protein ZC455.3 [Caenorhabditis elegans] ref|NP_506203.1| ZC455.3 [Caenorhabditis elegans] 0.0
blast CAA99957 Hypothetical protein ZC455.6a [Caenorhabditis elegans] ref|NP_506200.1| ZC455.6a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.5E-6
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-12
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-29
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.2E-17
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-12
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 6.5E-67
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-21
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.5E-10
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-12
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.2E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506201.1 1 501-523
ZC455.5 1 501-523
SNAP00000034472 2 5-27,1313-1335
GENEFINDER00000034480 9 488-510,517-539,1372-1394,1840-1859,1874-1893,1906-1928,1959-1981,1997-2019,2034-2052
Sequence
Target Sequence 
>C. ELEGANS:191053_AT
aaagactggttccctcaaagagctcttctcgctgacaaacgagtgaaacttttcataact
catggaggtcttggaagcactatggagcttgcatatgcagctaagccagctattgtgatt
ccgctaattgcagaacaaccggataacggtaaaatgttagcaagacacggatcagcggaa
atctactcaaaacacgacattcctcactgggaaaagctgaatcgactccttcaaaagatg
ctccagcattcttcctatcaaaaagctgctgatcgtcttgctcgagttctttctaatcaa
ccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGACTGGTTCCCTCAAAGAGCTC 62 123 1093 Antisense
CAAAGAGCTCTTCTCGCTGACAAAC 116 193 1108 Antisense
GGAGCTTGCATATGCAGCTAAGCCA 46 519 1176 Antisense
GCTAAGCCAGCTATTGTGATTCCGC 220 303 1192 Antisense
GATTCCGCTAATTGCAGAACAACCG 44 431 1209 Antisense
GACACGGATCAGCGGAAATCTACTC 110 367 1256 Antisense
CTCAAAACACGACATTCCTCACTGG 341 227 1278 Antisense
GAATCGACTCCTTCAAAAGATGCTC 482 329 1311 Antisense
AAAGATGCTCCAGCATTCTTCCTAT 233 123 1326 Antisense
AAAAAGCTGCTGATCGTCTTGCTCG 68 131 1352 Antisense
GCTCGAGTTCTTTCTAATCAACCAA 477 299 1372 Antisense
Sequence Source Affymetrix Proprietary Database