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[191051_at] Enhancer of rudimentary

Description T21C9.4 /REP_DB=WormBase Gene ID /WP=CE06473 /TR=SW:Q22640 /GB=CAA97332.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Enhancer of rudimentary
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 95      6grp_total > 95      4grp_total > 16      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 477
1 2 3 4 range
A 372.9
(-3)
P 		407.1
(-2.5)
P 		438.1
(-2)
P 		753.6
(3)
P 		381
B 276.9
(-3)
P 		492.7
(-0.2)
P 		490.5
(-0.2)
P 		731.4
(3)
P 		455
C 370.5
(-3)
P 		565.5
(0.1)
P 		553.8
(-0.1)
P 		744.4
(3)
P 		374
avr 340.1
(-3) 		488.4
(-0.8) 		494.1
(-0.7) 		743.1
(3) 		403

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 734
1 2 3 4 5 6 range
A 374.9
(-3)
P 		416.2
(-2.5)
P 		700.7
(0.6)
P 		792.3
(1.6)
P 		914.6
(3)
P 		877.3
(2.6)
P 		540
B 439.2
(-3)
P 		503.8
(-2.2)
P 		489.2
(-2.3)
P 		708.4
(0.5)
P 		897.5
(3)
P 		875
(2.7)
P 		458
C 552.9
(-1.8)
P 		417.5
(-3)
P 		644.2
(-1)
P 		569.7
(-1.7)
P 		948
(1.6)
P 		1108.4
(3)
P 		691
avr 455.7
(-2.9) 		445.8
(-3) 		611.4
(-1) 		690.1
(-0.1) 		920
(2.6) 		953.6
(3) 		508
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 135.8
(3)
P 		88.4
(-3)
P 		114.5
(0.3)
P 		110.3
(-0.2)
P 		47
B 88.3
(-3)
P 		121.7
(-0)
P 		113.7
(-0.7)
P 		155.9
(3)
P 		68
C 122.7
(-3)
P 		162.6
(0.4)
P 		193
(3)
P 		125.5
(-2.8)
P 		70
avr 115.6
(-3) 		124.2
(-0.9) 		140.4
(3) 		130.6
(0.6) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 69.1
(-3)
P 		148
(-0.7)
P 		152.6
(-0.6)
P 		200.9
(0.8)
P 		276
(3)
P 		213.6
(1.2)
P 		207
B 152.8
(-2.2)
P 		167.7
(-1.8)
P 		118.8
(-3)
P 		187.6
(-1.3)
P 		364.7
(3)
P 		326.3
(2.1)
P 		246
C 204.9
(-0.9)
P 		127.4
(-2.7)
P 		164
(-1.8)
P 		114.6
(-3)
P 		306.8
(1.5)
P 		371
(3)
P 		256
avr 142.3
(-3) 		147.7
(-2.8) 		145.1
(-2.9) 		167.7
(-2.1) 		315.8
(3) 		303.6
(2.6) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191051_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12437
Sequence Type Exemplar sequence
Representative Public ID T21C9.4 NCBI
Target Description T21C9.4 /REP_DB=WormBase Gene ID /WP=CE06473 /TR=SW:Q22640 /GB=CAA97332.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Enhancer of rudimentary
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073312 NCBI Caenorhabditis elegans T21C9.4 (T21C9.4) mRNA, complete cds. 11/11 None
SNAP00000011984 ENSEMBL cdna:SNAP chromosome:CEL140:V:10581181:10581608:-1 11/11 None
GENEFINDER00000011998 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10581181:10581608:-1 11/11 None
T21C9.4 ENSEMBL cdna:known chromosome:CEL140:V:10581009:10581608:-1 gene:T21C9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10581180-10581608(-) 100.0 100.0
Public Domain and Genome References
Gene Title Enhancer of rudimentary
Ensembl T21C9.4
Entrez Gene 179476 Entrez gene
SwissProt Q22640 EMBL-EBI
WormBase CE06473 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250406_AT enhancer of rudimentary protein, putative at
CANINE:1583835_AT similar to Enhancer of rudimentary homolog cfa
CANINE_2:CFA.11513.2.A1_AT similar to Enhancer of rudimentary homolog cfa
CANINE_2:CFAAFFX.25345.1.S1_S_AT similar to Enhancer of rudimentary homolog cfa
DROSOPHILA_2:1633549_S_AT enhancer of rudimentary dm
DROSGENOME1:153502_AT enhancer of rudimentary dm
CHICKEN:GGA.7836.1.S1_S_AT enhancer of rudimentary homolog (Drosophila) gga
PLASMODIUM_ANOPHELES:200043_AT enhancer of rudimentary homolog (Drosophila) hs
HG-U133B:200043_AT enhancer of rudimentary homolog (Drosophila) hs
HG-U133A_2:200043_AT enhancer of rudimentary homolog (Drosophila) hs
HG-U133A:200043_AT enhancer of rudimentary homolog (Drosophila) hs
HG-U133_PLUS_2:200043_AT enhancer of rudimentary homolog (Drosophila) hs
HG-FOCUS:200043_AT enhancer of rudimentary homolog (Drosophila) hs
U133_X3P:200043_AT enhancer of rudimentary homolog (Drosophila) hs
HUGENEFL:D85758_AT enhancer of rudimentary homolog (Drosophila) hs
U133_X3P:G4758301_3P_AT enhancer of rudimentary homolog (Drosophila) hs
HG-U95AV2:39079_AT enhancer of rudimentary homolog (Drosophila) hs
MOUSE430A_2:1430536_A_AT enhancer of rudimentary homolog (Drosophila) mm
MOE430A:1430536_A_AT enhancer of rudimentary homolog (Drosophila) mm
MOUSE430_2:1430536_A_AT enhancer of rudimentary homolog (Drosophila) mm
MU11KSUBA:D73368_S_AT enhancer of rudimentary homolog (Drosophila) mm
MG-U74AV2:94040_AT enhancer of rudimentary homolog (Drosophila) mm
MG-U74CV2:137188_AT enhancer of rudimentary homolog (Drosophila) mm
MG-U74CV2:170035_AT enhancer of rudimentary homolog (Drosophila) mm
MOUSE430_2:1443325_AT Enhancer of rudimentary homolog (Drosophila) (Erh), mRNA mm
MOE430B:1443325_AT Enhancer of rudimentary homolog (Drosophila) (Erh), mRNA mm
MU19KSUBC:TC35882_F_AT Enhancer of rudimentary homolog (Drosophila) (Erh), mRNA mm
RAE230A:1371544_AT similar to Enhancer of rudimentary homolog rn
RAT230_2:1371544_AT similar to Enhancer of rudimentary homolog rn
Protein Similarities
Method ID Description E-Value
blast CAA97332 Hypothetical protein T21C9.4 [Caenorhabditis elegans] ref|NP_505713.1| T21C9.4 [Caenorhabditis elegans] sp|Q22640|ERH_CAEEL Enhancer of rudimentary homolog 1.0E-55
blast CAE64850 Hypothetical protein CBG09646 [Caenorhabditis briggsae] 6.0E-45
blast Q93104 Enhancer of rudimentary homolog gb|AAC47489.1| enhancer of rudimentary homolog [Aedes aegypti] 3.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR000781 EMBL-EBI Enhancer of rudimentary 1.0E-86
Sequence
Target Sequence 
>C. ELEGANS:191051_AT
tgagtcacacaattcttctgctccaaccgacagacaacatcgagtcacgttcatggtcgg
attatgagaataccacggaatgtcttgaaggaatctgcagagtctacgaagaatatttga
aaaagaaggttccggctcaaaacgaaatcacctatgacatatcgcaccttttcgagttca
tcgacgacctcaaagatctttcaatgctggttctcgacaatacaacatacacatatgtcc
cccacaataagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGTCACACAATTCTTCTGCTCCA 106 569 14 Antisense
TCTTCTGCTCCAACCGACAGACAAC 574 617 27 Antisense
CAGACAACATCGAGTCACGTTCATG 641 203 44 Antisense
GAATACCACGGAATGTCTTGAAGGA 366 325 81 Antisense
GAAGGAATCTGCAGAGTCTACGAAG 654 333 100 Antisense
GTTCCGGCTCAAAACGAAATCACCT 666 439 142 Antisense
AATCACCTATGACATATCGCACCTT 521 171 159 Antisense
TATCGCACCTTTTCGAGTTCATCGA 354 659 173 Antisense
GTTCATCGACGACCTCAAAGATCTT 281 445 189 Antisense
ATCTTTCAATGCTGGTTCTCGACAA 175 31 209 Antisense
CACATATGTCCCCCACAATAAGCAA 113 197 243 Antisense
Sequence Source Affymetrix Proprietary Database