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[191050_at] 7TM chemoreceptor, srd family

Description F07C4.5 /REP_DB=WormBase Gene ID /WP=CE09204 /GEN=srd-30 /TR=P91209 /GB=AAG24039.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 44      4grp_total > 20      6grp_cgc > 44      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 25.5
(3)
A 		17.8
(0.5)
A 		7.1
(-3)
A 		9.3
(-2.3)
A 		18
B 46.6
(3)
A 		14.5
(-1.8)
A 		6.6
(-3)
A 		24.6
(-0.3)
A 		40
C 3.4
(-3)
A 		27.1
(-1.1)
A 		21.3
(-1.5)
A 		77.3
(3)
A 		74
avr 25.2
(0.2) 		19.8
(-1.1) 		11.7
(-3) 		37.1
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 11.8
(-0.5)
A 		4.7
(-3)
A 		22
(3)
A 		8
(-1.9)
A 		7.3
(-2.1)
A 		5.8
(-2.6)
A 		17
B 6.5
(-2.7)
A 		48.2
(3)
A 		37.7
(1.6)
A 		9.8
(-2.3)
A 		4.4
(-3)
A 		29
(0.4)
A 		44
C 57.9
(3)
A 		44.9
(1.1)
A 		37.2
(-0.1)
A 		29
(-1.3)
A 		17.5
(-3)
A 		26.9
(-1.6)
A 		40
avr 25.4
(1.1) 		32.6
(3) 		32.3
(2.9) 		15.6
(-1.5) 		9.7
(-3) 		20.6
(-0.1) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.3
(3)
A 		3.9
(-1.1)
A 		1.9
(-2.6)
A 		1.4
(-3)
A 		8
B 14.8
(3)
A 		3.6
(-2.1)
A 		1.5
(-3)
A 		5.2
(-1.3)
A 		13
C 1.1
(-3)
A 		7.8
(0.4)
A 		7.4
(0.2)
A 		13
(3)
A 		12
avr 8.4
(3) 		5.1
(-1.1) 		3.6
(-3) 		6.5
(0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.2
(-1.6)
A 		1.7
(-2.5)
A 		4.8
(3)
A 		2
(-1.9)
A 		2.2
(-1.6)
A 		1.4
(-3)
A 		3
B 2.2
(-2.8)
A 		16
(3)
A 		9.1
(0.1)
A 		2.6
(-2.7)
A 		1.8
(-3)
A 		10.8
(0.8)
A 		14
C 21.5
(3)
A 		13.7
(0)
A 		9.5
(-1.6)
A 		5.8
(-3)
A 		5.7
(-3)
A 		9
(-1.7)
A 		16
avr 8.6
(1.4) 		10.5
(3) 		7.8
(0.8) 		3.5
(-2.8) 		3.2
(-3) 		7.1
(0.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12004
Sequence Type Exemplar sequence
Representative Public ID F07C4.5 NCBI
Target Description F07C4.5 /REP_DB=WormBase Gene ID /WP=CE09204 /GEN=srd-30 /TR=P91209 /GB=AAG24039.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072571 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-30) (srd-30) mRNA, complete cds. 11/11 A 
SNAP00000003389 ENSEMBL cdna:SNAP chromosome:CEL140:V:7632985:7633890:1 11/11 None
GENEFINDER00000003403 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7632459:7633890:1 11/11 None
F07C4.5 ENSEMBL cdna:known chromosome:CEL140:V:7632396:7633890:1 gene:F07C4.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7632396-7633891(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-30
Ensembl F07C4.5
Entrez Gene 191813 Entrez gene
SwissProt P91209 EMBL-EBI
WormBase CE09204 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 0.0
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 1.0E-174
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 1.0E-152
blast NP_504974 Serpentine Receptor, class D (delta) family member (srd-31) [Caenorhabditis elegans] gb|AAG24040.1| Serpentine receptor, class d (delta) protein 31 [Caenorhabditis elegans] sp|P91211|SRD31_CAEEL Serpentine receptor class delta-31 (Protein srd-31) 1.0E-141
blast NP_504975 Serpentine Receptor, class D (delta) family member (srd-29) [Caenorhabditis elegans] gb|AAG24045.1| Serpentine receptor, class d (delta) protein 29 [Caenorhabditis elegans] 1.0E-133
blast NP_504974 Serpentine Receptor, class D (delta) family member (srd-31) [Caenorhabditis elegans] gb|AAG24040.1| Serpentine receptor, class d (delta) protein 31 [Caenorhabditis elegans] sp|P91211|SRD31_CAEEL Serpentine receptor class delta-31 (Protein srd-31) 1.0E-133
blast NP_504975 Serpentine Receptor, class D (delta) family member (srd-29) [Caenorhabditis elegans] gb|AAG24045.1| Serpentine receptor, class d (delta) protein 29 [Caenorhabditis elegans] 1.0E-125
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504972.1 7 5-27,48-70,85-107,123-145,174-196,224-246,256-278
F07C4.5 7 5-27,48-70,85-107,123-145,174-196,224-246,256-278
SNAP00000003389 5 40-62,75-97,126-148,176-198,208-230
GENEFINDER00000003403 5 67-89,102-124,153-175,203-225,235-257
Sequence
Target Sequence 
>C. ELEGANS:191050_AT
acacctggtgtttgttgcattttgcctttcaattccatccatggttcatatggctgcttg
gttcagtttctacgattcaaacgagacaactgaagatttgtcatcgtatggaattggatc
aggtgaaatggctcttggtggggaagtcgtttactggtctgcaatcactctcatcactca
actattcatcactgcattcttggtcgtcgtggcttacatttggatccgcgagacgctctg
cagcttcgcggtcaagatgggttctgtcaaaaaggatgtgaaaaacttgaacaaaagact
tgtcaaggttatcaactttcaagtgttcctcccgtcattcatctttctcggagtgatcac
ttttgcatccatgtttaccagcaaaatcagctatgagtatgcccaatacgccatctccgt
gatcttcatgttctccccaatttgttccccattctcgtacattctctttgtcccccacta
ccgcaacgtcatcattggaaagaagaagcaaccgaagcctcatccagaaatgtgcggccc
cattagaagtaacaccagaactaccagcatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCTGGTGTTTGTTGCATTTTGC 443 107 375 Antisense
ATGGTTCATATGGCTGCTTGGTTCA 192 51 415 Antisense
TGCTTGGTTCAGTTTCTACGATTCA 601 577 429 Antisense
GGTGGGGAAGTCGTTTACTGGTCTG 628 221 511 Antisense
TACATTTGGATCCGCGAGACGCTCT 15 645 589 Antisense
GCAGCTTCGCGGTCAAGATGGGTTC 590 313 614 Antisense
CCACTACCGCAACGTCATCATTGGA 455 275 849 Antisense
GAAGAAGCAACCGAAGCCTCATCCA 140 341 876 Antisense
GCCTCATCCAGAAATGTGCGGCCCC 369 281 891 Antisense
TGCGGCCCCATTAGAAGTAACACCA 674 581 907 Antisense
GTAACACCAGAACTACCAGCATCTC 706 461 923 Antisense
Sequence Source Affymetrix Proprietary Database