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[191049_at] Domain of unknown function

Description F57G8.6 /REP_DB=WormBase Gene ID /WP=CE23788 /TR=Q9XU89 /GB=CAB60324.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Domain of unknown function
Cluster 6grp_high1_10_10 > 92      6grp_total > 84      4grp_total > 15      6grp_cgc > 77      6grp_high1_sub > 04_05      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 58.3
(3)
P 		39.4
(-1.3)
A 		32.3
(-2.9)
A 		31.8
(-3)
A 		27
B 65.2
(2)
P 		17.5
(-3)
A 		51.4
(0.5)
A 		74.8
(3)
A 		57
C 64.2
(3)
P 		41.3
(-2.5)
A 		39.2
(-3)
A 		59.5
(1.9)
A 		25
avr 62.6
(3) 		32.7
(-3) 		41
(-1.3) 		55.4
(1.6) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 77.6
(-1.4)
A 		78
(-1.3)
P 		62.5
(-3)
P 		118.5
(3)
P 		118.3
(3)
P 		113.1
(2.4)
M 		56
B 58.2
(-1.4)
P 		79.1
(0.6)
P 		40.8
(-3)
P 		105.3
(3)
P 		84.2
(1)
P 		77.6
(0.4)
P 		65
C 68.2
(-3)
P 		69.4
(-2.9)
P 		108.2
(1.7)
P 		89.8
(-0.4)
P 		119
(3)
P 		90.6
(-0.4)
P 		51
avr 68
(-3) 		75.5
(-1.9) 		70.5
(-2.6) 		104.5
(2.6) 		107.2
(3) 		93.8
(0.9) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 21.2
(3)
P 		8.5
(-1.6)
A 		8.4
(-1.7)
A 		4.7
(-3)
A 		17
B 20.8
(3)
P 		4.3
(-3)
A 		11.9
(-0.2)
A 		16
(1.3)
A 		17
C 21.2
(3)
P 		11.9
(-2)
A 		13.7
(-1)
A 		10
(-3)
A 		11
avr 21.1
(3) 		8.2
(-3) 		11.3
(-1.6) 		10.2
(-2.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 14.3
(-2.8)
A 		27.7
(0.8)
P 		13.6
(-3)
P 		30.1
(1.5)
P 		35.7
(3)
P 		27.5
(0.8)
M 		22
B 20.2
(-0.5)
P 		26.3
(1)
P 		9.9
(-3)
P 		27.9
(1.4)
P 		34.2
(3)
P 		28.9
(1.7)
P 		24
C 25.3
(-0.9)
P 		21.2
(-2.1)
P 		27.5
(-0.2)
P 		18.1
(-3)
P 		38.5
(3)
P 		30.3
(0.6)
P 		20
avr 19.9
(-2.1) 		25.1
(-0.5) 		17
(-3) 		25.4
(-0.4) 		36.1
(3) 		28.9
(0.7) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13040
Sequence Type Exemplar sequence
Representative Public ID F57G8.6 NCBI
Target Description F57G8.6 /REP_DB=WormBase Gene ID /WP=CE23788 /TR=Q9XU89 /GB=CAB60324.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Domain of unknown function
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074730 NCBI Caenorhabditis elegans F57G8.6 (F57G8.6) mRNA, complete cds. 11/11 None
F57G8.6 ENSEMBL cdna:known chromosome:CEL140:V:16345080:16346838:1 gene:F57G8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011322 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011330 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16345079-16346838(+) 100.0 100.0
Public Domain and Genome References
Gene Title Domain of unknown function
Gene Symbol nhr-193
Ensembl F57G8.6
Entrez Gene 180098 Entrez gene
SwissProt Q9XU89 EMBL-EBI
WormBase CE23788 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60324 Hypothetical protein F57G8.6 [Caenorhabditis elegans] emb|CAB05534.2| Hypothetical protein F57G8.6 [Caenorhabditis elegans] ref|NP_507131.1| F57G8.6 [Caenorhabditis elegans] 0.0
blast AAB69950 Nuclear hormone receptor family protein 90 [Caenorhabditis elegans] ref|NP_503263.1| Nuclear Hormone Receptor family member (nhr-90) [Caenorhabditis elegans] 1.0E-160
blast AAG15180 nuclear receptor NHR-90 [Caenorhabditis elegans] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.6E-5
Sequence
Target Sequence 
>C. ELEGANS:191049_AT
accgcgaaatggttgacgtactttgaagaatttaaaaagattccaagagatctaatgatc
aagctacttctatcattttggcacgttttttcaagacttgacaagttgatcacaacggca
agagctcgtaaattgaaagtttgctcacagcagacatgggcgatgagcaatggatttatt
ctagattttgacaaaaccaaagtcgatttttggaaacttagcaattaccctgcaaaagat
ctattttatttcctaaactcaatggctgcgttggacctacaaccacaagtacaggagcta
caagagcttgaagtatcagatgtggaattcaactttatgctggcacaactcactttttcg
tatgcaggaaaacggcttcaaggagatattttgaagatttgtgaaaaatttcaagaagtc
ttgtcaaatgatttgcatgagcattatgtgaaggaacttggaatgcaaaggtattcggga
agattgagcaaaattatgaaaattaataatgctattcagaatgacatttggagtaaccgc
ccacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGCGAAATGGTTGACGTACTTTG 513 87 541 Antisense
CAAGCTACTTCTATCATTTTGGCAC 578 183 600 Antisense
TTGGCACGTTTTTTCAAGACTTGAC 137 703 618 Antisense
AGTTGATCACAACGGCAAGAGCTCG 632 63 644 Antisense
TTGCTCACAGCAGACATGGGCGATG 261 697 681 Antisense
GGAAACTTAGCAATTACCCTGCAAA 531 527 752 Antisense
AAACTCAATGGCTGCGTTGGACCTA 49 129 795 Antisense
GGACCTACAACCACAAGTACAGGAG 593 513 813 Antisense
TTTATGCTGGCACAACTCACTTTTT 547 667 874 Antisense
ACAACTCACTTTTTCGTATGCAGGA 36 113 885 Antisense
ATGACATTTGGAGTAACCGCCCACG 646 43 1061 Antisense
Sequence Source Affymetrix Proprietary Database