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[191048_at] 50S ribosomal protein L16

Description T04A8.11 /REP_DB=WormBase Gene ID /WP=CE01066 /TR=Q22140 /GB=CAA84730.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=50S ribosomal protein L16
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 76      6grp_total > 40      4grp_total > 59      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 778
1 2 3 4 range
A 1023.8
(0.8)
P 		1192.7
(2.1)
P 		1307
(3)
P 		529.4
(-3)
P 		778
B 1142.9
(2.4)
P 		1156.8
(2.5)
P 		1207.1
(3)
P 		574
(-3)
P 		633
C 956.3
(0.3)
P 		1136.6
(1.8)
P 		1273.3
(3)
P 		576
(-3)
P 		697
avr 1041
(1.1) 		1162
(2.1) 		1262.5
(3) 		559.8
(-3) 		703

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 686
1 2 3 4 5 6 range
A 1291.1
(3)
P 		924.5
(-1.3)
P 		1201.3
(2)
P 		996.5
(-0.4)
P 		773.9
(-3)
P 		795.1
(-2.8)
P 		517
B 1147.5
(3)
P 		1075
(1.8)
P 		1079.9
(1.9)
P 		1034
(1.1)
P 		787.1
(-3)
P 		971.7
(0.1)
P 		360
C 845.3
(-0.7)
P 		1236.1
(3)
P 		1186.8
(2.5)
P 		1093.3
(1.6)
P 		604.9
(-3)
P 		1103.8
(1.7)
P 		631
avr 1094.6
(2.2) 		1078.5
(1.9) 		1156
(3) 		1041.3
(1.4) 		722
(-3) 		956.9
(0.2) 		434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 372.8
(3)
P 		258.9
(0.7)
P 		341.7
(2.4)
P 		77.5
(-3)
P 		295
B 364.5
(3)
P 		285.7
(1)
P 		279.7
(0.9)
P 		122.3
(-3)
P 		242
C 316.6
(0.8)
P 		326.8
(1)
P 		443.8
(3)
P 		97.1
(-3)
P 		347
avr 351.3
(2.9) 		290.5
(1.5) 		355.1
(3) 		99
(-3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 238
(-1)
P 		328.8
(3)
P 		261.6
(0)
P 		252.7
(-0.4)
P 		233.5
(-1.2)
P 		193.6
(-3)
P 		135
B 399.3
(3)
P 		357.8
(1.2)
P 		262.2
(-3)
P 		273.9
(-2.5)
P 		319.8
(-0.5)
P 		362.3
(1.4)
P 		137
C 313.3
(0.9)
P 		377.2
(3)
P 		302
(0.5)
P 		219.9
(-2.2)
P 		195.7
(-3)
P 		369.5
(2.7)
P 		182
avr 316.9
(0.9) 		354.6
(3) 		275.3
(-1.5) 		248.8
(-3) 		249.7
(-2.9) 		308.5
(0.4) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7214
Sequence Type Exemplar sequence
Representative Public ID T04A8.11 NCBI
Target Description T04A8.11 /REP_DB=WormBase Gene ID /WP=CE01066 /TR=Q22140 /GB=CAA84730.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=50S ribosomal protein L16
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065564 NCBI Caenorhabditis elegans T04A8.11 (T04A8.11) mRNA, complete cds. 11/11 None
SNAP00000041099 ENSEMBL cdna:SNAP chromosome:CEL140:III:4704369:4705269:1 11/11 None
GENEFINDER00000041110 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4704369:4705269:1 11/11 None
T04A8.11 ENSEMBL cdna:known chromosome:CEL140:III:4704366:4705338:1 gene:T04A8.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4704431-4705269(+) 100.0 100.0
Public Domain and Genome References
Gene Title 50S ribosomal protein L16
Ensembl T04A8.11
Entrez Gene 188040 Entrez gene
SwissProt Q22140 EMBL-EBI
WormBase CE01066 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603899_X_AT similar to mitochondrial ribosomal protein L16 cfa
CANINE:1583768_AT similar to mitochondrial ribosomal protein L16 cfa
CANINE_2:CFA.11680.1.A1_AT similar to mitochondrial ribosomal protein L16 cfa
CANINE_2:CFAAFFX.16147.1.S1_S_AT similar to mitochondrial ribosomal protein L16 cfa
DROSOPHILA_2:1629936_AT mitochondrial ribosomal protein L16 dm
DROSGENOME1:154009_AT mitochondrial ribosomal protein L16 dm
CHICKEN:GGA.9830.1.S1_A_AT similar to mitochondrial ribosomal protein L16 gga
HG-U133A:217980_S_AT mitochondrial ribosomal protein L16 hs
HG-U133_PLUS_2:217980_S_AT mitochondrial ribosomal protein L16 hs
HG-U133A_2:217980_S_AT mitochondrial ribosomal protein L16 hs
HU35KSUBA:AA310967_S_AT mitochondrial ribosomal protein L16 hs
HU35KSUBD:RC_R06400_AT mitochondrial ribosomal protein L16 hs
U133_X3P:G8923447_3P_S_AT mitochondrial ribosomal protein L16 hs
HG-U95B:45798_AT mitochondrial ribosomal protein L16 hs
MG-U74AV2:99140_AT mitochondrial ribosomal protein L16 mm
MOE430A:1450880_AT mitochondrial ribosomal protein L16 mm
MOUSE430A_2:1450880_AT mitochondrial ribosomal protein L16 mm
MOUSE430_2:1450880_AT mitochondrial ribosomal protein L16 mm
MU19KSUBB:TC25874_AT MRPL16 mRNA for mitochondrial ribosomal protein L16 (L16mt) mm
MU19KSUBB:TC27249_AT MRPL16 mRNA for mitochondrial ribosomal protein L16 (L16mt) mm
MU19KSUBB:TC31586_AT MRPL16 mRNA for mitochondrial ribosomal protein L16 (L16mt) mm
MU19KSUBB:TC32971_AT MRPL16 mRNA for mitochondrial ribosomal protein L16 (L16mt) mm
MU19KSUBB:TC32971_G_AT MRPL16 mRNA for mitochondrial ribosomal protein L16 (L16mt) mm
RG-U34C:RC_AI175221_AT mitochondrial ribosomal protein L16 rn
RAE230A:1371967_AT mitochondrial ribosomal protein L16 rn
RAT230_2:1371967_AT mitochondrial ribosomal protein L16 rn
RAE230A:1382811_AT Mitochondrial ribosomal protein L16 rn
RAT230_2:1382811_AT Mitochondrial ribosomal protein L16 rn
RG-U34A:RC_AA891721_AT Mitochondrial ribosomal protein L16 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84730 Hypothetical protein T04A8.11 [Caenorhabditis elegans] ref|NP_497965.1| T04A8.11 [Caenorhabditis elegans] 1.0E-119
blast CAA84730 Hypothetical protein T04A8.11 [Caenorhabditis elegans] ref|NP_497965.1| T04A8.11 [Caenorhabditis elegans] 1.0E-118
blast CAE71150 Hypothetical protein CBG18006 [Caenorhabditis briggsae] 1.0E-113
blast EAA10491 ENSANGP00000011467 [Anopheles gambiae str. PEST] ref|XP_315089.2| ENSANGP00000011467 [Anopheles gambiae str. PEST] 9.0E-36
Sequence
Target Sequence 
>C. ELEGANS:191048_AT
aaatgtccgatttccaccaaatggacagttgaagctaccagtgatgccagctgagccatt
ttatgatgccgaaaaaggagagaaaaaatacaagtcaacaaagcgaatgattgaggcgag
aggagtagaagaagtacatacagaacttattcacgagcagtatggccttgctgctgtatc
aggaggattcattgatagtgatgacttcaaattcattcaagatcgaatcaataaaaatct
tattgacaatcagttttctgtctggcgagttgatgcaccatggctgccgagaacaaaaaa
agcacagggaactaggttaggaggtggaaaaggatccattcagaagtatgtgacaccagt
aagagcaaatcgtattattctggaagttggcgggcatatcactgaaattgaggcgaaagc
atttctcctgtacctttgcgaacgtttctcattcccagtcgagttcgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTCCGATTTCCACCAAATGGA 100 121 45 Antisense
GACAGTTGAAGCTACCAGTGATGCC 460 369 68 Antisense
ACCAGTGATGCCAGCTGAGCCATTT 397 85 81 Antisense
GCTGAGCCATTTTATGATGCCGAAA 75 297 94 Antisense
TATGGCCTTGCTGCTGTATCAGGAG 274 655 205 Antisense
TTTCTGTCTGGCGAGTTGATGCACC 142 671 299 Antisense
GATGCACCATGGCTGCCGAGAACAA 462 413 316 Antisense
GGAAGTTGGCGGGCATATCACTGAA 309 531 426 Antisense
TGAGGCGAAAGCATTTCTCCTGTAC 615 567 453 Antisense
GTACCTTTGCGAACGTTTCTCATTC 156 459 474 Antisense
TTCTCATTCCCAGTCGAGTTCGTAA 321 689 490 Antisense
Sequence Source Affymetrix Proprietary Database