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[191047_at] Ogre family

Description W04D2.3 /REP_DB=WormBase Gene ID /WP=CE06538 /GEN=inx-11 /TR=SW:Q23157 /GB=CAA99940.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ogre family
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 59      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 39      4grp_total > 46      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 234.3
(3)
P 		151.6
(-1.9)
M 		133.4
(-3)
P 		178.2
(-0.3)
P 		101
B 249.2
(3)
P 		155.9
(-1.1)
P 		113.7
(-3)
P 		148.5
(-1.5)
P 		136
C 244.2
(3)
P 		154.4
(-0.6)
P 		144.5
(-1)
P 		93.9
(-3)
P 		150
avr 242.6
(3) 		154
(-1.7) 		130.5
(-3) 		140.2
(-2.5) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 249.3
(1.7)
P 		265.3
(3)
P 		194.4
(-2.7)
P 		191
(-3)
P 		254.8
(2.2)
P 		264.5
(2.9)
P 		74
B 228.4
(1.2)
P 		251.1
(3)
P 		173.9
(-3)
P 		218.8
(0.5)
P 		239.2
(2.1)
P 		200.4
(-0.9)
P 		77
C 210.2
(0.3)
P 		192.7
(-3)
P 		204.7
(-0.8)
P 		197.7
(-2.1)
P 		224.8
(3)
P 		201.1
(-1.4)
P 		32
avr 229.3
(1.7) 		236.4
(2.6) 		191
(-3) 		202.5
(-1.6) 		239.6
(3) 		222
(0.8) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 85.3
(3)
P 		32.9
(-2.3)
M 		34.9
(-2.1)
P 		26.1
(-3)
P 		59
B 79.5
(3)
P 		38.5
(-1.6)
P 		26.3
(-3)
P 		31.6
(-2.4)
P 		53
C 80.8
(3)
P 		44.4
(-0.4)
P 		50.4
(0.2)
P 		15.8
(-3)
P 		65
avr 81.9
(3) 		38.6
(-1.5) 		37.2
(-1.7) 		24.5
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 46
(-2.6)
P 		94.4
(3)
P 		42.3
(-3)
P 		48.4
(-2.3)
P 		76.9
(1)
P 		64.4
(-0.5)
P 		52
B 79.5
(1.1)
P 		83.6
(1.5)
P 		42.2
(-3)
P 		58
(-1.3)
P 		97.2
(3)
P 		74.7
(0.5)
P 		55
C 77.9
(3)
P 		58.8
(-0)
P 		52.1
(-1.1)
P 		39.8
(-3)
P 		72.7
(2.2)
P 		67.3
(1.3)
P 		38
avr 67.8
(0.6) 		78.9
(2.4) 		45.5
(-3) 		48.7
(-2.5) 		82.3
(3) 		68.8
(0.8) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14538
Sequence Type Exemplar sequence
Representative Public ID W04D2.3 NCBI
Target Description W04D2.3 /REP_DB=WormBase Gene ID /WP=CE06538 /GEN=inx-11 /TR=SW:Q23157 /GB=CAA99940.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ogre family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073729(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073729 NCBI Caenorhabditis elegans INneXin family member (inx-11) (inx-11) mRNA, complete cds. 11/11 None
SNAP00000021796 ENSEMBL cdna:SNAP chromosome:CEL140:V:12492053:12495706:1 11/11 None
GENEFINDER00000021802 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12489854:12495706:1 11/11 None
W04D2.3 ENSEMBL cdna:known chromosome:CEL140:V:12492048:12495810:1 gene:W04D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12492052-12495706(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ogre family
Gene Symbol inx-11
Ensembl W04D2.3
Entrez Gene 179710 Entrez gene
SwissProt Q23157 EMBL-EBI
WormBase CE06538 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640798_A_AT Saccharomyces cerevisiae UAS construct a of Bauer dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99940 Hypothetical protein W04D2.3 [Caenorhabditis elegans] ref|NP_506130.1| INneXin family member (inx-11) [Caenorhabditis elegans] sp|Q23157|INX11_CAEEL Innexin-11 0.0
blast CAE75498 Hypothetical protein CBG23507 [Caenorhabditis briggsae] 0.0
blast CAE72131 Hypothetical protein CBG19227 [Caenorhabditis briggsae] 6.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506130.1 2 197-219,289-311
W04D2.3 2 197-219,289-311
SNAP00000021796 2 197-219,289-311
GENEFINDER00000021802 2 252-274,344-366
Sequence
Target Sequence 
>C. ELEGANS:191047_AT
gaggtccgtcaagttgccaatattcaaagatattcggttcagtgtgttcttgtgatcaat
attttcaatgagaagattttcgttttgttgtggttttggtacgtgattcttcttctttcg
tcgactgtttcacttgtccaatggttcatcgttctcgtttttccatgcttttcaaaatgg
ttcgtcaaacagcatctggctctcagcactcttcagaatttcaatcaacgaaacagtcgg
cgtgaagattctgatgtttctaagtttgtgacacagtacctgcataaagatggtgttttt
gtgcttcgaatggtatcatcacatgctggaatcattttcgcaacagacttggtgcaggct
ttatatgaagcatacgattttcaagataaaaataaagacgttcaaggaagcccagtcagc
gatgatctacagacaatcagcactggagcagaatcttcgattcgacaacggaagactaga
aaaggaagtcgtatagaatacaaggctggatttccaatcagtacaagtttgatgcctgat
aaagatgatattgagtcaagctccacgtcttctgaagaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTCCGTCAAGTTGCCAATATTC 302 403 793 Antisense
TCGGTTCAGTGTGTTCTTGTGATCA 138 607 826 Antisense
TTTGGTACGTGATTCTTCTTCTTTC 638 665 887 Antisense
TTCGTCGACTGTTTCACTTGTCCAA 25 695 909 Antisense
CAATGGTTCATCGTTCTCGTTTTTC 521 181 931 Antisense
TCTCGTTTTTCCATGCTTTTCAAAA 677 609 945 Antisense
GATGGTGTTTTTGTGCTTCGAATGG 64 409 1081 Antisense
GGTATCATCACATGCTGGAATCATT 2 505 1104 Antisense
TTCGCAACAGACTTGGTGCAGGCTT 271 697 1129 Antisense
AAGGAAGCCCAGTCAGCGATGATCT 663 157 1196 Antisense
CAAGCTCCACGTCTTCTGAAGAAGA 160 187 1349 Antisense
Sequence Source Affymetrix Proprietary Database