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[191045_at] 7TM chemoreceptor, srh family

Description C02E7.5 /REP_DB=WormBase Gene ID /WP=CE07842 /GEN=srh-23 /TR=O16430 /GB=AAC24164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 02      4grp_total > 27      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 16.2
(-0.2)
A 		4.1
(-3)
A 		12.7
(-1)
A 		30.4
(3)
A 		26
B 27.9
(1.6)
A 		35.3
(3)
A 		3
(-3)
A 		13
(-1.1)
A 		32
C 9.5
(-2.4)
A 		40.8
(1.3)
A 		4.7
(-3)
A 		55
(3)
P 		50
avr 17.9
(-0.4) 		26.7
(1.6) 		6.8
(-3) 		32.8
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.3
(-2.7)
A 		31.8
(3)
A 		2.1
(-2.9)
A 		2.5
(-2.9)
A 		16.6
(-0)
A 		1.8
(-3)
A 		30
B 28.2
(3)
A 		12.6
(-0.6)
A 		10.8
(-1)
A 		20.1
(1.1)
A 		4.5
(-2.5)
A 		2.2
(-3)
A 		26
C 11.3
(-0.7)
A 		25.2
(2.8)
A 		12.7
(-0.4)
A 		2.4
(-3)
A 		25.8
(3)
A 		2.9
(-2.9)
A 		23
avr 14.3
(0.4) 		23.2
(3) 		8.5
(-1.2) 		8.3
(-1.3) 		15.6
(0.8) 		2.3
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.9
(3)
A 		0.9
(-3)
A 		3.3
(-0.1)
A 		4.5
(1.3)
A 		5
B 8.9
(3)
A 		8.7
(2.9)
A 		0.7
(-3)
A 		2.8
(-1.5)
A 		8
C 3.2
(-2)
A 		11.7
(3)
A 		1.6
(-3)
A 		9.3
(1.6)
P 		10
avr 6
(1.7) 		7.1
(3) 		1.9
(-3) 		5.5
(1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		11.3
(3)
A 		0.5
(-2.9)
A 		0.6
(-2.9)
A 		5
(-0.5)
A 		0.4
(-3)
A 		11
B 9.8
(3)
A 		4.2
(-0.7)
A 		2.6
(-1.8)
A 		5.3
(0)
A 		1.8
(-2.3)
A 		0.8
(-3)
A 		9
C 4.2
(-0.2)
A 		7.7
(2.5)
A 		3.2
(-0.9)
A 		0.5
(-3)
A 		8.3
(3)
A 		1
(-2.6)
A 		8
avr 4.9
(0.6) 		7.7
(3) 		2.1
(-1.8) 		2.1
(-1.8) 		5
(0.7) 		0.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15352
Sequence Type Exemplar sequence
Representative Public ID C02E7.5 NCBI
Target Description C02E7.5 /REP_DB=WormBase Gene ID /WP=CE07842 /GEN=srh-23 /TR=O16430 /GB=AAC24164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071921 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-23) (srh-23) mRNA, complete cds. 11/11 None
C02E7.5 ENSEMBL cdna:known chromosome:CEL140:V:4921036:4922430:1 gene:C02E7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015183 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4921035-4922430(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-23
Ensembl C02E7.5
Entrez Gene 191849 Entrez gene
SwissProt O16430 EMBL-EBI
WormBase CE07842 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24164 Serpentine receptor, class h protein 23 [Caenorhabditis elegans] ref|NP_504322.1| Serpentine Receptor, class H family member (srh-23) [Caenorhabditis elegans] 0.0
blast AAC24163 Serpentine receptor, class h protein 22 [Caenorhabditis elegans] ref|NP_504323.1| Serpentine Receptor, class H family member (srh-22) [Caenorhabditis elegans] 1.0E-149
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504322.1 6 13-35,94-116,129-151,199-221,241-263,273-295
C02E7.5 6 13-35,94-116,129-151,199-221,241-263,273-295
Sequence
Target Sequence 
>C. ELEGANS:191045_AT
attcactgtttatttcactcgatgcatttcaatttttgatacattttttgtaatattgac
atcgcatgatgctcaccgatttcaagaagaacacaaagcaacatttctgaaacaaaatcc
ttctgctcattttctaacttgtgaaaattcttatctgtttgtccctttctccgactacgt
ttccacttcaataatgattctatggattgctgaatgcgtaataatttttctctctgttcc
tggaatcactatttttatcaacttgaaaatttcaaaatccacctcgaaaaatacttggaa
agtacaaaaacaattattgaaaagtttagttatacaagcattaattcattcgtttacgat
gggtctgccaaatttgatgtttacatatggatttttcttcggttatgcaagcgaaacaat
agcgtatggtgcatttgtcttcataacatatcatggatttgtttcaacttttgcacttat
cgcattcactaagcctatacgcgattatctgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCACTGTTTATTTCACTCGATGC 81 13 411 Antisense
GACATCGCATGATGCTCACCGATTT 568 369 468 Antisense
GCGTAATAATTTTTCTCTCTGTTCC 485 291 626 Antisense
TTCTCTCTGTTCCTGGAATCACTAT 180 691 638 Antisense
CATTCGTTTACGATGGGTCTGCCAA 367 217 757 Antisense
GGGTCTGCCAAATTTGATGTTTACA 108 497 771 Antisense
GTTTACATATGGATTTTTCTTCGGT 572 449 789 Antisense
TAGCGTATGGTGCATTTGTCTTCAT 317 651 830 Antisense
TTCAACTTTTGCACTTATCGCATTC 545 685 873 Antisense
TATCGCATTCACTAAGCCTATACGC 618 657 888 Antisense
AAGCCTATACGCGATTATCTGCAAT 182 149 901 Antisense
Sequence Source Affymetrix Proprietary Database