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[191044_at] 7TM chemoreceptor, str family

Description C31B8.6 /REP_DB=WormBase Gene ID /WP=CE08486 /GEN=str-46 /TR=O16899 /GB=AAG23980.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 65      4grp_total > 17      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 8.6
(-2.4)
A 		22
(-0.4)
A 		4.6
(-3)
A 		44.3
(3)
A 		40
B 4.2
(-3)
A 		6.2
(-2.3)
A 		21.4
(3)
A 		13.5
(0.2)
A 		17
C 5.9
(-3)
A 		16.1
(-2.1)
A 		15.9
(-2.1)
A 		73.5
(3)
A 		68
avr 6.2
(-3) 		14.8
(-1.6) 		14
(-1.8) 		43.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 14.2
(0.7)
A 		1
(-3)
A 		18.8
(2)
A 		8.6
(-0.8)
A 		5.8
(-1.6)
A 		22.2
(3)
A 		21
B 7.7
(-3)
A 		16.3
(2.9)
A 		10.1
(-1.4)
A 		7.9
(-2.9)
A 		16.5
(3)
A 		13.7
(1.1)
A 		9
C 3.5
(-3)
A 		5.5
(-1.4)
A 		11.2
(3)
A 		8.8
(1.1)
A 		5.3
(-1.6)
A 		6.2
(-0.9)
A 		8
avr 8.5
(-2.2) 		7.6
(-3) 		13.4
(2.4) 		8.4
(-2.3) 		9.2
(-1.5) 		14
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.1
(-0.8)
A 		4.8
(1.1)
A 		1.2
(-3)
A 		6.5
(3)
A 		5
B 1.4
(-3)
A 		1.5
(-2.8)
A 		4.9
(3)
A 		2.9
(-0.4)
A 		4
C 1.9
(-3)
A 		4.6
(-1.5)
A 		5.6
(-0.9)
A 		12.4
(3)
A 		11
avr 2.1
(-3) 		3.6
(-1.3) 		3.9
(-0.9) 		7.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.6
(-0.4)
A 		0.4
(-3)
A 		4.1
(1.4)
A 		2.2
(-0.8)
A 		1.8
(-1.3)
A 		5.4
(3)
A 		5
B 2.7
(-2.2)
A 		5.4
(1.3)
A 		2.5
(-2.5)
A 		2.1
(-3)
A 		6.7
(3)
A 		5.1
(0.9)
A 		5
C 1.3
(-3)
A 		1.7
(-1.5)
A 		2.9
(3)
A 		1.8
(-1.1)
A 		1.7
(-1.5)
A 		2.1
(0)
A 		2
avr 2.2
(-2.5) 		2.5
(-1.6) 		3.2
(0.3) 		2
(-3) 		3.4
(0.8) 		4.2
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191044_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15427
Sequence Type Exemplar sequence
Representative Public ID C31B8.6 NCBI
Target Description C31B8.6 /REP_DB=WormBase Gene ID /WP=CE08486 /GEN=str-46 /TR=O16899 /GB=AAG23980.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071387 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-46) (str-46) mRNA, complete cds. 11/11 None
GENEFINDER00000035077 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2898373:2903137:-1 10/11 None
C31B8.6 ENSEMBL cdna:known chromosome:CEL140:V:2898263:2899794:-1 gene:C31B8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035067 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2898262-2899794(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-46
Ensembl C31B8.6
Entrez Gene 191979 Entrez gene
SwissProt O16899 EMBL-EBI
WormBase CE08486 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503788 Seven TM Receptor family member (str-46) [Caenorhabditis elegans] gb|AAG23980.1| Seven tm receptor protein 46 [Caenorhabditis elegans] 0.0
blast NP_503789 C31B8.7 [Caenorhabditis elegans] gb|AAG23977.1| Hypothetical protein C31B8.7 [Caenorhabditis elegans] 0.0
blast NP_503534 T06A1.5 [Caenorhabditis elegans] gb|AAC17770.1| Hypothetical protein T06A1.5 [Caenorhabditis elegans] 1.0E-171
blast CAE62374 Hypothetical protein CBG06460 [Caenorhabditis briggsae] 1.0E-154
blast CAE62376 Hypothetical protein CBG06462 [Caenorhabditis briggsae] 1.0E-129
blast CAE61826 Hypothetical protein CBG05796 [Caenorhabditis briggsae] 5.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 4.0E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503788.1 7 10-32,45-62,85-107,128-150,196-218,242-264,279-301
C31B8.6 7 10-32,45-62,85-107,128-150,196-218,242-264,279-301
GENEFINDER00000035077 4 7-24,457-479,503-525,540-562
Sequence
Target Sequence 
>C. ELEGANS:191044_AT
agctgggcaggaagtcccgacgagtattcggatgactatttgagaaatacatttttggat
tcttacgacttggatataacccagacagctcgatttgtcttaattccttatgcttctgat
gactcgttacgatggcgaaatctatcttttatcatttgtggtggatccttattaaccgtt
cagtacgtcataataatcatctgtgctataaaaatgcactcggctatggagcgcgaactc
cgaaagttctcggtccgaaaccgaagtgttcagcggcaattttttcgagctctcatcgtg
caaaccttggtgccgacttttctttttgtggtacctgcgatgccacttctcatgggtccg
ttgtttgatattgagtgggatttgcagactggcggaattattgctcttttgagtgtctat
ccgccaatcgattcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGGGCAGGAAGTCCCGACGAGT 365 81 457 Antisense
GGATATAACCCAGACAGCTCGATTT 599 509 528 Antisense
ATTCCTTATGCTTCTGATGACTCGT 122 9 559 Antisense
GTGGATCCTTATTAACCGTTCAGTA 529 489 617 Antisense
AAATGCACTCGGCTATGGAGCGCGA 400 119 668 Antisense
ATTTTTTCGAGCTCTCATCGTGCAA 39 15 735 Antisense
ATCGTGCAAACCTTGGTGCCGACTT 314 35 751 Antisense
TTCTTTTTGTGGTACCTGCGATGCC 126 689 776 Antisense
ACTTCTCATGGGTCCGTTGTTTGAT 622 103 801 Antisense
GACTGGCGGAATTATTGCTCTTTTG 616 375 843 Antisense
TGTCTATCCGCCAATCGATTCATTT 103 559 870 Antisense
Sequence Source Affymetrix Proprietary Database