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[191043_s_at] Yeast HUS2 protein like

Description F12F6.7 /REP_DB=WormBase Gene ID /WP=CE05595 /TR=SW:Q19366 /GB=CAA97785.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast HUS2 protein like
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 87      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 43      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 232.5
(-1.4)
P 		294.2
(3)
P 		209.3
(-3)
P 		210.5
(-2.9)
P 		85
B 255.5
(-1.4)
P 		368.6
(3)
P 		226.4
(-2.5)
P 		214.1
(-3)
P 		155
C 301.7
(-0.4)
P 		396.2
(3)
P 		257
(-2)
P 		230.8
(-3)
P 		165
avr 263.2
(-1) 		353
(3) 		230.9
(-2.4) 		218.5
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 432
1 2 3 4 5 6 range
A 255.2
(-3)
P 		252.8
(-3)
P 		255.9
(-2.9)
P 		378.3
(-0.8)
P 		417.5
(-0.2)
P 		601.2
(3)
P 		348
B 246.8
(-1.5)
P 		169.2
(-3)
P 		207.4
(-2.2)
P 		339.5
(0.4)
P 		376.3
(1.1)
P 		470
(3)
P 		301
C 279.2
(-1.4)
P 		174
(-3)
P 		234.9
(-2.1)
P 		250.2
(-1.9)
P 		405.4
(0.5)
P 		573.1
(3)
P 		399
avr 260.4
(-1.9) 		198.7
(-3) 		232.7
(-2.4) 		322.7
(-0.9) 		399.7
(0.5) 		548.1
(3) 		349
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 84.6
(3)
P 		63.9
(0.7)
P 		54.7
(-0.3)
P 		30.8
(-3)
P 		54
B 81.5
(1.7)
P 		91
(3)
P 		52.5
(-2.1)
P 		45.6
(-3)
P 		45
C 99.9
(1.9)
P 		113.9
(3)
P 		89.6
(1.1)
P 		38.9
(-3)
P 		75
avr 88.7
(2.9) 		89.6
(3) 		65.6
(0.2) 		38.4
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 47.1
(-3)
P 		89.9
(-0.4)
P 		55.7
(-2.5)
P 		95.9
(-0.1)
P 		126
(1.8)
P 		146.4
(3)
P 		99
B 85.9
(-1.3)
P 		56.3
(-2.7)
P 		50.4
(-3)
P 		89.9
(-1.1)
P 		152.9
(1.9)
P 		175.3
(3)
P 		125
C 103.5
(-0.7)
P 		53.1
(-2.9)
P 		59.8
(-2.6)
P 		50.3
(-3)
P 		131.2
(0.4)
P 		191.8
(3)
P 		142
avr 78.8
(-1.8) 		66.4
(-2.4) 		55.3
(-3) 		78.7
(-1.8) 		136.7
(1.2) 		171.2
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191043_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9923
Sequence Type Exemplar sequence
Representative Public ID F12F6.7 NCBI
Target Description F12F6.7 /REP_DB=WormBase Gene ID /WP=CE05595 /TR=SW:Q19366 /GB=CAA97785.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast HUS2 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069776 NCBI Caenorhabditis elegans F12F6.7 (F12F6.7) mRNA, complete cds. 11/11 None
SNAP00000024852 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11558868:11561802:-1 11/11 None
GENEFINDER00000024866 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11558868:11561802:-1 11/11 None
F12F6.7.1 ENSEMBL cdna:known chromosome:CEL140:IV:11558726:11561803:-1 gene:F12F6.7 11/11 None
F12F6.7.2 ENSEMBL cdna:known chromosome:CEL140:IV:11558868:11561828:-1 gene:F12F6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11558873-11561808(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast HUS2 protein like
Ensembl F12F6.7
Entrez Gene 178077 Entrez gene
SwissProt Q19366 EMBL-EBI
WormBase CE05595 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97785 Hypothetical protein F12F6.7 [Caenorhabditis elegans] ref|NP_502177.1| F12F6.7 [Caenorhabditis elegans] sp|Q19366|DPOD2_CAEEL Preobable DNA polymerase delta small subunit 0.0
blast CAE62100 Hypothetical protein CBG06130 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:191043_S_AT
cgttcgaacacttactctttcacgtgcagagaaacattcttcaacagcatcactaattac
tgtagacaaaattattaattcaattgctgaaaaacctcttgttaacactgtcgacgtgac
tcctggtgttggtgatccatgctcatcgatgtggccactgccacctattcacagagtttg
tcttccacgttgtggaatgagtgataaaaaagtgaatcttgtgacaaatccatatgaatt
tgaagtcaatggactacgtgtgatgacaatgtctggcgaaaacgtgagcgagcttcttcg
tacttccctgaaatggacgggagctgatgctattgagaatatcattaaatggcaacatgt
ggcaccaaattgtccagatactcttgatgcattcccagtggctgaaagagatcctctgat
catggacatcacaccgcatgtgatcatttgtggaaatcaacctcacgccgagttccgtca
tattccaattgatggatcaaattgccttgttgtttgcctgcccaaattctccaaaactcg
tgtcgcctgctttctcaacttatctgatctttccctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTCGAACACTTACTCTTTCACGT 273 247 762 Antisense
AACCTCTTGTTAACACTGTCGACGT 332 147 854 Antisense
TCGACGTGACTCCTGGTGTTGGTGA 97 601 872 Antisense
ATCCATGCTCATCGATGTGGCCACT 638 39 896 Antisense
CCACTGCCACCTATTCACAGAGTTT 434 275 916 Antisense
CAGAGTTTGTCTTCCACGTTGTGGA 156 207 933 Antisense
AACGTGAGCGAGCTTCTTCGTACTT 535 143 1042 Antisense
CCAGATACTCTTGATGCATTCCCAG 164 273 1135 Antisense
CAAATTGCCTTGTTGTTTGCCTGCC 69 195 1259 Antisense
CAAATTCTCCAAAACTCGTGTCGCC 469 193 1284 Antisense
TCTCAACTTATCTGATCTTTCCCTG 706 611 1314 Antisense
Sequence Source Affymetrix Proprietary Database