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[191039_at] nuclear hormone receptor

Description Y71A12C.1 /REP_DB=WormBase Gene ID /WP=CE19264 /TR=Q9XXB5 /GB=CAA19558.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster 6grp_total > 11      4grp_total > 03      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 55.7
(2)
A 		8.8
(-3)
A 		47.3
(1.1)
A 		65.6
(3)
A 		57
B 22.9
(0.2)
A 		35.1
(3)
A 		9.3
(-3)
A 		31.9
(2.3)
A 		26
C 2.1
(-3)
A 		23.4
(-0.9)
A 		16.8
(-1.6)
A 		64.4
(3)
A 		62
avr 26.9
(-2.1) 		22.4
(-3) 		24.5
(-2.6) 		54
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 3
(-2.7)
A 		28.7
(3)
A 		11.8
(-0.8)
A 		1.7
(-3)
A 		7.5
(-1.7)
A 		2.5
(-2.8)
A 		27
B 3.7
(-1.7)
A 		7.7
(3)
A 		5.5
(0.4)
A 		3.5
(-1.9)
A 		2.6
(-3)
A 		3.8
(-1.6)
A 		5
C 14.9
(2.1)
A 		3.3
(-3)
A 		7.4
(-1.2)
A 		16.9
(3)
A 		7.7
(-1.1)
A 		4.2
(-2.6)
A 		14
avr 7.2
(-0.7) 		13.2
(3) 		8.2
(-0.1) 		7.4
(-0.6) 		5.9
(-1.5) 		3.5
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.3
(3)
A 		1.9
(-3)
A 		12.4
(0.4)
A 		9.6
(-0.5)
A 		18
B 7.3
(1.7)
A 		8.7
(3)
A 		2.2
(-3)
A 		6.8
(1.2)
A 		7
C 0.7
(-3)
A 		6.7
(0.5)
A 		5.9
(0.1)
A 		10.9
(3)
A 		10
avr 9.4
(3) 		5.8
(-3) 		6.8
(-1.3) 		9.1
(2.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.5
(-2.9)
A 		10.2
(3)
A 		2.6
(-1.7)
A 		0.4
(-3)
A 		2.3
(-1.8)
A 		0.6
(-2.9)
A 		10
B 1.3
(-1.6)
A 		2.6
(3)
A 		1.3
(-1.6)
A 		0.9
(-3)
A 		1.1
(-2.3)
A 		1.4
(-1.2)
A 		2
C 5.5
(3)
A 		1
(-3)
A 		1.9
(-1.8)
A 		3.4
(0.2)
A 		2.5
(-1)
A 		1.4
(-2.5)
A 		5
avr 2.4
(-0.8) 		4.6
(3) 		1.9
(-1.6) 		1.6
(-2.1) 		2
(-1.5) 		1.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1569
Sequence Type Exemplar sequence
Representative Public ID Y71A12C.1 NCBI
Target Description Y71A12C.1 /REP_DB=WormBase Gene ID /WP=CE19264 /TR=Q9XXB5 /GB=CAA19558.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061045 NCBI Caenorhabditis elegans Y71A12C.1 (Y71A12C.1) mRNA, complete cds. 11/11 None
Y71A12C.1 ENSEMBL cdna:known chromosome:CEL140:I:14049745:14051952:1 gene:Y71A12C.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010873 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14049675-14051883(+) 100.0 100.0
Public Domain and Genome References
Gene Title nuclear hormone receptor
Gene Symbol nhr-276
Ensembl Y71A12C.1
Entrez Gene 190581 Entrez gene
SwissProt Q9XXB5 EMBL-EBI
WormBase CE19264 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19558 Hypothetical protein Y71A12C.1 [Caenorhabditis elegans] ref|NP_493446.1| Y71A12C.1 [Caenorhabditis elegans] 0.0
blast CAE57224 Hypothetical protein CBG00089 [Caenorhabditis briggsae] 8.0E-41
blast AAG45579 Hypothetical protein ZK6.4 [Caenorhabditis elegans] ref|NP_503188.1| ZK6.4 [Caenorhabditis elegans] 3.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.7E-46
Sequence
Target Sequence 
>C. ELEGANS:191039_AT
gaccagggttcaattattcgatccgggtacattaagcacatgcttttctcaactgcattt
ttaagttacacgaagaagcttggcgaaatgcgatttcctgatggttccgacattttcgat
gctgaaattctcaaaactccggaattttctcatcgatttttaagagagattcgagaatta
ctagttgacaagttggccaatttgaaagtcactcaagaggagtacttgttactttcagtc
atatttctgtgtagtgaagctagtcccttactgtcagaggacggaaaagcaaagttgcca
tgtattcagagaatgtatgcatcatgtctactccactattgttgtctgcaaaattccaag
tctgcacctgccagattcaccgaattgttatcaatttggatcgttatcctccaaactttc
aaaaatttcagccattttgtgactctagtccagcttatcggcaaagaaacggactattcc
atcagcaggtgccgggtttccatctgggttgccttgttgccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCAGGGTTCAATTATTCGATCCG 417 383 517 Antisense
TAAGCACATGCTTTTCTCAACTGCA 700 635 549 Antisense
ATGCGATTTCCTGATGGTTCCGACA 595 39 604 Antisense
GTAGTGAAGCTAGTCCCTTACTGTC 552 455 767 Antisense
ATGTATGCATCATGTCTACTCCACT 632 47 829 Antisense
TGTCTACTCCACTATTGTTGTCTGC 141 559 841 Antisense
GCAAAATTCCAAGTCTGCACCTGCC 180 319 864 Antisense
GATCGTTATCCTCCAAACTTTCAAA 226 417 915 Antisense
TGACTCTAGTCCAGCTTATCGGCAA 147 569 956 Antisense
ACGGACTATTCCATCAGCAGGTGCC 497 95 985 Antisense
CATCTGGGTTGCCTTGTTGCCAAAT 536 211 1017 Antisense
Sequence Source Affymetrix Proprietary Database