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[191038_at] tetraspanin

Description C02F5.8 /REP_DB=WormBase Gene ID /WP=CE00044 /GEN=tsp-1 /TR=SW:P34285 /GB=AAA27923.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=tetraspanin
Cluster 6grp_high1_10_10 > 27      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_total > 27      4grp_total > 31      6grp_cgc > 06      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 184.2
(2.2)
P 		133.2
(-0.3)
P 		76.7
(-3)
P 		201.1
(3)
P 		124
B 208.5
(3)
P 		96.2
(-3)
P 		109.7
(-2.3)
P 		100.8
(-2.8)
P 		112
C 227
(3)
P 		74
(-3)
P 		90.1
(-2.4)
P 		120.5
(-1.2)
P 		153
avr 206.6
(3) 		101.1
(-2.5) 		92.2
(-3) 		140.8
(-0.5) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 383.5
(3)
P 		203.1
(-1.5)
P 		148.4
(-2.9)
P 		163.8
(-2.5)
P 		144.1
(-3)
M 		200.4
(-1.6)
P 		239
B 354.6
(3)
P 		203.4
(-0.8)
P 		135.7
(-2.5)
P 		113.9
(-3)
P 		154.7
(-2)
P 		173.6
(-1.5)
P 		241
C 324.8
(3)
P 		219
(0.2)
P 		151.9
(-1.5)
P 		133.7
(-2)
P 		96.4
(-3)
P 		205.7
(-0.1)
P 		228
avr 354.3
(3) 		208.5
(-0.9) 		145.3
(-2.6) 		137.1
(-2.9) 		131.7
(-3) 		193.2
(-1.3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 67.1
(3)
P 		28.9
(-1.9)
P 		20
(-3)
P 		29.4
(-1.8)
P 		47
B 66.5
(3)
P 		23.8
(-2.7)
P 		25.4
(-2.5)
P 		21.5
(-3)
P 		45
C 75.1
(3)
P 		21.3
(-2.9)
P 		31.4
(-1.8)
P 		20.3
(-3)
P 		55
avr 69.6
(3) 		24.7
(-2.9) 		25.6
(-2.8) 		23.7
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 70.7
(2.8)
P 		72.2
(3)
P 		32.3
(-3)
P 		41.5
(-1.6)
P 		43.5
(-1.3)
M 		48.8
(-0.5)
P 		40
B 123.4
(3)
P 		67.7
(-0.6)
P 		33
(-2.8)
P 		30.2
(-3)
P 		62.9
(-0.9)
P 		64.7
(-0.8)
P 		93
C 120.4
(3)
P 		66.8
(-0.4)
P 		38.7
(-2.2)
P 		26.9
(-3)
P 		31.2
(-2.7)
P 		68.8
(-0.3)
P 		94
avr 104.8
(3) 		68.9
(0) 		34.7
(-2.8) 		32.9
(-3) 		45.9
(-1.9) 		60.8
(-0.7) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7105
Sequence Type Exemplar sequence
Representative Public ID C02F5.8 NCBI
Target Description C02F5.8 /REP_DB=WormBase Gene ID /WP=CE00044 /GEN=tsp-1 /TR=SW:P34285 /GB=AAA27923.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=tetraspanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066403 NCBI Caenorhabditis elegans C02F5.8 (tetraspanin) mRNA, complete cds. 11/11 None
SNAP00000031506 ENSEMBL cdna:SNAP chromosome:CEL140:III:8238055:8239313:-1 11/11 None
GENEFINDER00000031519 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8238055:8239313:-1 11/11 None
C02F5.8 ENSEMBL cdna:known chromosome:CEL140:III:8237930:8239339:-1 gene:C02F5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8238050-8239309(-) 100.0 100.0
Public Domain and Genome References
Gene Title tetraspanin
Gene Symbol tsp-1
Ensembl C02F5.8
Entrez Gene 192096 Entrez gene
SwissProt P34285 EMBL-EBI
WormBase CE00044 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27923 Tetraspanin family protein 1 [Caenorhabditis elegans] ref|NP_498804.1| C02F5.8 [Caenorhabditis elegans] sp|P34285|TSP1_CAEEL Tetraspanin 1.0E-107
blast CAE56065 Hypothetical protein CBG23641 [Caenorhabditis briggsae] 3.0E-71
blast AAK71354 Tetraspanin family protein 2 [Caenorhabditis elegans] ref|NP_498803.1| C02F5.11 [Caenorhabditis elegans] 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 2.7E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498804.1 4 12-34,68-90,102-124,196-218
C02F5.8 4 12-34,68-90,102-124,196-218
SNAP00000031506 4 12-34,68-90,102-124,196-218
GENEFINDER00000031519 4 12-34,68-90,102-124,196-218
Sequence
Target Sequence 
>C. ELEGANS:191038_AT
atattcgtgtttggctcatcgttgtattctggagcattatcggcctttctttgggagccg
ttgtcacagctgttttgggaatgatttcaagtgtttggccaaaacgaaagggatttatga
taacttatctcgtactgatcatagttctagtttcactagaaattggatgtggagtggctg
ttcttgtaagaagaaattcattgcatgataatacaaacagtttgattgatgctatgtata
ctacaaactcagtcaatgatttgaagattattcaggataagtacaactgttgcggtatcg
agaactcactattcaacgttatgtattgcggtccaatgtcccaaaagcctcattgtgatg
tggcagtgtttgatagtgtggataacactatgatgatatctggaatcatacttcttgtta
ttctgatccttcaaactattgctatcattcttccagttcccatattgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCGTGTTTGGCTCATCGTTGT 286 19 197 Antisense
ATTCTGGAGCATTATCGGCCTTTCT 646 9 222 Antisense
ATCGGCCTTTCTTTGGGAGCCGTTG 566 1 235 Antisense
GCCGTTGTCACAGCTGTTTTGGGAA 443 283 253 Antisense
GGATGTGGAGTGGCTGTTCTTGTAA 145 515 361 Antisense
ACTGTTGCGGTATCGAGAACTCACT 45 99 482 Antisense
ATGTATTGCGGTCCAATGTCCCAAA 221 47 517 Antisense
ATGTCCCAAAAGCCTCATTGTGATG 304 49 532 Antisense
TACTTCTTGTTATTCTGATCCTTCA 414 645 605 Antisense
GATCCTTCAAACTATTGCTATCATT 131 417 621 Antisense
CATTCTTCCAGTTCCCATATTGATT 221 217 642 Antisense
Sequence Source Affymetrix Proprietary Database