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[191037_at] potassium channel protein

Description K06B4.12 /REP_DB=WormBase Gene ID /WP=CE16233 /TR=O17935 /GB=CAA15972.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=potassium channel protein
Cluster 4grp_high_8_8 > 13      6grp_total > 12      4grp_total > 04      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 90
(1)
P 		47.2
(-3)
A 		48.4
(-2.9)
A 		111
(3)
P 		64
B 79.1
(-0.6)
P 		47.2
(-3)
A 		72.5
(-1.1)
P 		126.5
(3)
P 		79
C 61
(-2.6)
P 		78
(-1.6)
P 		54.1
(-3)
P 		158.7
(3)
P 		105
avr 76.7
(-1.5) 		57.5
(-3) 		58.3
(-2.9) 		132.1
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 104.4
(3)
P 		59.2
(-1.8)
A 		70.4
(-0.6)
P 		48.2
(-3)
A 		73.4
(-0.3)
P 		58.1
(-1.9)
A 		56
B 90.1
(2.1)
P 		98.9
(3)
P 		80.6
(1)
M 		58.8
(-1.3)
A 		67.2
(-0.4)
P 		42.6
(-3)
P 		56
C 64.6
(-0.4)
P 		123.3
(3)
P 		60.9
(-0.7)
P 		74.1
(0.1)
A 		21.1
(-3)
A 		46.2
(-1.5)
P 		102
avr 86.4
(2) 		93.8
(3) 		70.6
(-0.1) 		60.4
(-1.5) 		53.9
(-2.3) 		49
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 32.8
(3)
P 		10.3
(-3)
A 		12.7
(-2.4)
A 		16.2
(-1.4)
P 		23
B 25.2
(2.3)
P 		11.6
(-3)
A 		16.8
(-1)
P 		27
(3)
P 		15
C 20.2
(-2)
P 		22.4
(-0.3)
P 		18.9
(-3)
P 		26.8
(3)
P 		8
avr 26.1
(3) 		14.8
(-3) 		16.1
(-2.3) 		23.3
(1.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 19.2
(1.2)
P 		21
(2.3)
A 		15.3
(-1.1)
P 		12.2
(-3)
A 		22.1
(3)
P 		14.2
(-1.8)
A 		10
B 31.3
(2.4)
P 		32.9
(3)
P 		19.6
(-1.6)
M 		15.6
(-3)
A 		27.3
(1.1)
P 		15.9
(-2.9)
P 		17
C 23.9
(0.3)
P 		37.6
(3)
P 		15.5
(-1.3)
P 		14.9
(-1.4)
A 		6.8
(-3)
A 		15.5
(-1.3)
P 		31
avr 24.8
(0.9) 		30.5
(3) 		16.8
(-2) 		14.2
(-3) 		18.7
(-1.3) 		15.2
(-2.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14181
Sequence Type Exemplar sequence
Representative Public ID K06B4.12 NCBI
Target Description K06B4.12 /REP_DB=WormBase Gene ID /WP=CE16233 /TR=O17935 /GB=CAA15972.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=potassium channel protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074505(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074505 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-34) (twk-34) mRNA, complete cds. 11/11 None
K06B4.12 ENSEMBL cdna:known chromosome:CEL140:V:15707540:15712112:1 gene:K06B4.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15708371-15711757(+) 100.0 100.0
Public Domain and Genome References
Gene Title potassium channel protein
Gene Symbol twk-34
Ensembl K06B4.12
Entrez Gene 180054 Entrez gene
SwissProt O17935 EMBL-EBI
WormBase CE30813 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5267 potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05769 Hypothetical protein K06B4.12 [Caenorhabditis elegans] emb|CAA15972.2| Hypothetical protein K06B4.12 [Caenorhabditis elegans] ref|NP_506906.2| TWiK family of potassium channels family member (twk-34) [Caenorhabditis elegans] 0.0
blast CAE61075 Hypothetical protein CBG04825 [Caenorhabditis briggsae] 0.0
blast CAE61731 Hypothetical protein CBG05682 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506906.2 5 90-112,218-240,279-301,311-333,340-357
K06B4.12 5 90-112,218-240,279-301,311-333,340-357
Sequence
Target Sequence 
>C. ELEGANS:191037_AT
gctctttaccttgcattttgcacaatatttatccacgtattcgatgagctcagtggagat
gaatctggaagtggaatgtctgtattcctttgtttctacttttcattcatatctctaagt
acaattggtttgggagatatcatgccgaataatgctacgttctcgcctatcatctctatc
atgtttttctttggtatggcactcaccaaggtcgtcaacaggaacacttttatagctgtc
gagaatggtatttttggtgccctgaccctcgtcgaaaacaagcttgatggaattgtcaga
aaaggcaaggaaatgccggatgagcagaagcaaccgaaagctttaactccccaaatgata
cagagagctctgagtgtggaagactacggtgctgctcaaagagaaaacaagaatgaggtg
atgaacaatttcacggtcagatctatcgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTTTACCTTGCATTTTGCACAA 321 301 988 Antisense
TATTCCTTTGTTTCTACTTTTCATT 181 665 1070 Antisense
TGCCGAATAATGCTACGTTCTCGCC 591 585 1130 Antisense
TCGCCTATCATCTCTATCATGTTTT 241 599 1150 Antisense
TGTTTTTCTTTGGTATGGCACTCAC 537 561 1169 Antisense
TATGGCACTCACCAAGGTCGTCAAC 388 655 1182 Antisense
AGAATGGTATTTTTGGTGCCCTGAC 421 73 1229 Antisense
CCCTGACCCTCGTCGAAAACAAGCT 75 259 1247 Antisense
GAAAGCTTTAACTCCCCAAATGATA 367 355 1323 Antisense
TGTGGAAGACTACGGTGCTGCTCAA 204 555 1362 Antisense
ATTTCACGGTCAGATCTATCGCAAC 148 15 1415 Antisense
Sequence Source Affymetrix Proprietary Database