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[191036_at] lipase (Bacillus subtilis)

Description F10F2.3 /REP_DB=WormBase Gene ID /WP=CE00948 /TR=Q19310 /GB=CAA84650.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=lipase (Bacillus subtilis)
Cluster 6grp_total > 82      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 789
1 2 3 4 range
A 22.1
(-2.9)
A 		609
(1.6)
P 		789.8
(3)
P 		11.7
(-3)
A 		778
B 22.8
(-3)
A 		591
(1.4)
P 		800.4
(3)
P 		46.5
(-2.8)
A 		778
C 68.6
(-2.9)
A 		599.9
(2.6)
P 		639.3
(3)
P 		56.3
(-3)
A 		583
avr 37.8
(-3) 		600
(1.8) 		743.2
(3) 		38.2
(-3) 		705

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 39.6
(-3)
A 		391.8
(1.9)
P 		382.2
(1.8)
P 		460.3
(2.9)
P 		470.9
(3)
P 		187.2
(-0.9)
A 		431
B 73
(-3)
A 		518.8
(2.9)
P 		362.5
(0.9)
P 		523.7
(3)
P 		507.8
(2.8)
P 		225.4
(-1)
A 		451
C 70.4
(-3)
A 		551.4
(3)
P 		301
(-0.1)
P 		434.3
(1.5)
P 		424.5
(1.4)
P 		248.8
(-0.8)
P 		481
avr 61
(-3) 		487.3
(3) 		348.6
(1) 		472.8
(2.8) 		467.7
(2.7) 		220.5
(-0.8) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 8.1
(-2.8)
A 		132.2
(0.8)
P 		206.5
(3)
P 		1.7
(-3)
A 		205
B 7.3
(-3)
A 		146
(1.7)
P 		185.5
(3)
P 		9.9
(-2.9)
A 		178
C 22.7
(-2.6)
A 		172.5
(1.6)
P 		222.8
(3)
P 		9.5
(-3)
A 		213
avr 12.7
(-2.8) 		150.2
(1.3) 		204.9
(3) 		7
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 7.3
(-3)
A 		139.3
(2.9)
P 		83.2
(0.4)
P 		116.8
(1.9)
P 		142.1
(3)
P 		45.6
(-1.3)
A 		135
B 25.4
(-3)
A 		172.7
(1.9)
P 		88
(-0.9)
P 		138.7
(0.8)
P 		206.3
(3)
P 		84
(-1.1)
A 		181
C 26.1
(-3)
A 		168.2
(3)
P 		76.6
(-0.9)
P 		87.3
(-0.4)
P 		137.4
(1.7)
P 		83.3
(-0.6)
P 		142
avr 19.6
(-3) 		160.1
(2.9) 		82.6
(-0.3) 		114.3
(1) 		161.9
(3) 		71
(-0.8) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6248
Sequence Type Exemplar sequence
Representative Public ID F10F2.3 NCBI
Target Description F10F2.3 /REP_DB=WormBase Gene ID /WP=CE00948 /TR=Q19310 /GB=CAA84650.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=lipase (Bacillus subtilis)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065540 NCBI Caenorhabditis elegans F10F2.3 (F10F2.3) mRNA, complete cds. 11/11 None
SNAP00000027604 ENSEMBL cdna:SNAP chromosome:CEL140:III:4616838:4618737:1 11/11 None
GENEFINDER00000027622 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4616838:4618737:1 11/11 None
F10F2.3 ENSEMBL cdna:known chromosome:CEL140:III:4616838:4618737:1 gene:F10F2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4616837-4618737(+) 100.0 100.0
Public Domain and Genome References
Gene Title lipase (Bacillus subtilis)
Ensembl F10F2.3
Entrez Gene 184306 Entrez gene
SwissProt Q19310 EMBL-EBI
WormBase CE00948 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84650 Hypothetical protein F10F2.3 [Caenorhabditis elegans] ref|NP_497941.1| F10F2.3 [Caenorhabditis elegans] 0.0
blast CAE71171 Hypothetical protein CBG18028 [Caenorhabditis briggsae] 1.0E-178
blast CAB01664 Hypothetical protein T01C3.4 [Caenorhabditis elegans] ref|NP_506688.1| T01C3.4 [Caenorhabditis elegans] 4.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191036_AT
ttattgctcattccgttggtgttcctcttatgagaaaagttgtgaaaggaggaactttga
ttggaacagacggaaattgcacattgggtccaccacttggagcaaaagttgacacttttc
taggaattgccgggccgaacttcggactgtgcgtctgtcaattggctcaaactgttcccg
cttggtgcaatgcgttggatggtttgtatccaggatatacttgtcaagatcagctgtggt
gtggatacacatcgggaagttgcaagcaagaaaactactcgaatcttctccaaaaaacca
acgacgatccaaatcgagaaggagatcatgtgtatgcaatgtggagtgatgttgatgaag
ttcttctgaatcgaggaatggtttggggtaaaccaacagcaagaattccaggaatgaacg
gtcgctggataagtgatcgtaatggccacgtggcaatgaaggatctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTGCTCATTCCGTTGGTGTTCC 41 679 404 Antisense
TTCCGTTGGTGTTCCTCTTATGAGA 401 699 414 Antisense
AAATTGCACATTGGGTCCACCACTT 391 115 477 Antisense
TAGGAATTGCCGGGCCGAACTTCGG 400 651 524 Antisense
AACTTCGGACTGTGCGTCTGTCAAT 656 137 541 Antisense
TGTCAATTGGCTCAAACTGTTCCCG 79 559 559 Antisense
GTTCCCGCTTGGTGCAATGCGTTGG 283 441 577 Antisense
ACTTGTCAAGATCAGCTGTGGTGTG 320 101 622 Antisense
AGAAAACTACTCGAATCTTCTCCAA 307 73 672 Antisense
AAGTGATCGTAATGGCCACGTGGCA 574 157 834 Antisense
GGCCACGTGGCAATGAAGGATCTCA 70 545 847 Antisense
Sequence Source Affymetrix Proprietary Database