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[191035_at] 7TM chemoreceptor, srh family

Description C02E7.4 /REP_DB=WormBase Gene ID /WP=CE07841 /GEN=srh-22 /TR=O16431 /GB=AAC24163.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 50      4grp_total > 12      6grp_cgc > 50      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 32.3
(0.5)
A 		12.3
(-2)
A 		4.7
(-3)
A 		52
(3)
A 		47
B 19.9
(-2.3)
A 		25.4
(-1.4)
A 		15.3
(-3)
A 		52.6
(3)
A 		37
C 16.9
(-1.4)
A 		16.1
(-1.5)
A 		2.2
(-3)
A 		57.1
(3)
A 		55
avr 23
(-1) 		17.9
(-1.6) 		7.4
(-3) 		53.9
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 12.8
(-1.8)
A 		14.6
(-1.4)
A 		31.8
(1.6)
A 		39.6
(3)
A 		14.6
(-1.4)
A 		5.8
(-3)
A 		34
B 24
(3)
A 		13.9
(0)
A 		3.8
(-3)
A 		4.2
(-2.9)
A 		15.1
(0.4)
A 		10.8
(-0.9)
A 		20
C 36.9
(1.5)
A 		32.1
(0.8)
A 		23.4
(-0.5)
A 		47.1
(3)
A 		6.6
(-3)
A 		10
(-2.5)
A 		41
avr 24.6
(1.4) 		20.2
(0.2) 		19.7
(0) 		30.3
(3) 		12.1
(-2.1) 		8.9
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.7
(3)
A 		2.7
(-2.1)
A 		1.2
(-3)
A 		7.6
(0.7)
A 		11
B 6.3
(-0.8)
A 		6.3
(-0.8)
A 		3.5
(-3)
A 		11.2
(3)
A 		8
C 5.6
(0.3)
A 		4.6
(-0.4)
A 		0.8
(-3)
A 		9.6
(3)
A 		9
avr 7.9
(1.8) 		4.5
(-0.9) 		1.8
(-3) 		9.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.4
(-2.3)
A 		5.2
(-0.3)
A 		6.9
(0.8)
A 		10
(3)
A 		4.4
(-0.9)
A 		1.4
(-3)
A 		9
B 8.4
(3)
A 		4.6
(-0)
A 		0.9
(-3)
A 		1.1
(-2.8)
A 		6.1
(1.2)
A 		4
(-0.5)
A 		8
C 13.7
(3)
A 		9.8
(1)
A 		5.9
(-1)
A 		9.5
(0.8)
A 		2.1
(-3)
A 		3.4
(-2.3)
A 		12
avr 8.2
(3) 		6.5
(1.1) 		4.6
(-1.1) 		6.9
(1.5) 		4.2
(-1.5) 		2.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15466
Sequence Type Exemplar sequence
Representative Public ID C02E7.4 NCBI
Target Description C02E7.4 /REP_DB=WormBase Gene ID /WP=CE07841 /GEN=srh-22 /TR=O16431 /GB=AAC24163.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071922(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071922 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-22) (srh-22) mRNA, complete cds. 11/11 None
GENEFINDER00000015198 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4923106:4927782:1 11/11 None
C02E7.4 ENSEMBL cdna:known chromosome:CEL140:V:4923106:4924408:1 gene:C02E7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4923105-4924408(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-22
Ensembl C02E7.4
Entrez Gene 191848 Entrez gene
SwissProt O16431 EMBL-EBI
WormBase CE07841 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24163 Serpentine receptor, class h protein 22 [Caenorhabditis elegans] ref|NP_504323.1| Serpentine Receptor, class H family member (srh-22) [Caenorhabditis elegans] 0.0
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-179
blast AAC24163 Serpentine receptor, class h protein 22 [Caenorhabditis elegans] ref|NP_504323.1| Serpentine Receptor, class H family member (srh-22) [Caenorhabditis elegans] 1.0E-156
blast AAC24164 Serpentine receptor, class h protein 23 [Caenorhabditis elegans] ref|NP_504322.1| Serpentine Receptor, class H family member (srh-23) [Caenorhabditis elegans] 1.0E-149
blast AAC24164 Serpentine receptor, class h protein 23 [Caenorhabditis elegans] ref|NP_504322.1| Serpentine Receptor, class H family member (srh-23) [Caenorhabditis elegans] 1.0E-125
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.3E-5
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.7E-18
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.3E-5
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.7E-18
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-22
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.7E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504323.1 6 13-35,92-114,134-153,198-220,241-263,273-295
C02E7.4 6 13-35,92-114,134-153,198-220,241-263,273-295
GENEFINDER00000015198 15 13-35,164-186,210-232,239-261,313-335,390-412,427-449,456-478,532-554,574-596,611-633,646-668,714-736,765-787,792-814
Sequence
Target Sequence 
>C. ELEGANS:191035_AT
tattcgatgcatttcagtttttgacacatttttggcaatattgacgtcacaagatgctta
tcggtttcaagaagaacacaaagcaacatttctgaaacaagatccttctgctcattttct
aacttgtgataatgtttatctgtttgtcccatttgcagattatatttctactacaataat
aattttatggattgttgaatgcatagtactatttctttctattcctgggaccgcaatttt
catcaacttgagcatttcaaaatcagcatcggagagtacttggaaaattcagaagaattt
actgaagagtttagtgatacaagcatcgattcattcaattatgatgggtgtgccaaatgg
gatgtttaattatgcattcttttttggatatgaaaatgaatcactagcttatggggcatt
tgtaatcctaacatatcatggatttgtttcaacttttgcgcttattatattcactaaacc
actacgtgaataccttctcattgctttcaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCGATGCATTTCAGTTTTTGAC 476 663 426 Antisense
GACGTCACAAGATGCTTATCGGTTT 669 377 468 Antisense
TGTTTATCTGTTTGTCCCATTTGCA 562 561 558 Antisense
TTCTTTCTATTCCTGGGACCGCAAT 626 689 638 Antisense
TCCTGGGACCGCAATTTTCATCAAC 660 593 648 Antisense
GATACAAGCATCGATTCATTCAATT 396 423 741 Antisense
GAATCACTAGCTTATGGGGCATTTG 266 327 823 Antisense
GGGGCATTTGTAATCCTAACATATC 461 497 838 Antisense
TTCAACTTTTGCGCTTATTATATTC 546 685 873 Antisense
AACCACTACGTGAATACCTTCTCAT 485 145 902 Antisense
AATACCTTCTCATTGCTTTCAAGAT 335 173 914 Antisense
Sequence Source Affymetrix Proprietary Database