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[191033_at] 7TM chemoreceptor, srd family

Description F07C4.4 /REP_DB=WormBase Gene ID /WP=CE09203 /GEN=srd-25 /TR=P91210 /GB=AAG24038.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 81      4grp_total > 10      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 2.6
(-3)
A 		7.8
(3)
A 		2.6
(-3)
A 		3.5
(-2)
A 		5
B 5.7
(3)
A 		2.6
(-2.6)
A 		2.7
(-2.5)
A 		2.4
(-3)
A 		3
C 2.8
(-2.8)
A 		3.2
(-2.7)
A 		1.1
(-3)
A 		47.2
(3)
A 		46
avr 3.7
(-2.4) 		4.5
(-2.1) 		2.1
(-3) 		17.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.9
(-2.5)
A 		4.1
(-2.4)
A 		3
(-2.7)
A 		25.2
(3)
A 		1.8
(-3)
A 		7.1
(-1.6)
A 		23
B 4.2
(0.1)
A 		7
(3)
A 		3.7
(-0.5)
A 		3.3
(-0.9)
A 		1.3
(-3)
A 		2.2
(-2.1)
A 		6
C 2.5
(-2.8)
A 		2.1
(-2.9)
A 		4.7
(-2.3)
A 		8.8
(-1.2)
A 		24.6
(3)
A 		1.9
(-3)
A 		23
avr 3.5
(-3) 		4.4
(-2.4) 		3.8
(-2.8) 		12.4
(3) 		9.2
(0.8) 		3.7
(-2.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1
(-0.5)
A 		1.7
(3)
A 		0.7
(-2)
A 		0.5
(-3)
A 		1
B 1.8
(3)
A 		0.6
(-2.5)
A 		0.6
(-2.5)
A 		0.5
(-3)
A 		1
C 0.9
(-2.6)
A 		0.9
(-2.6)
A 		0.4
(-3)
A 		8
(3)
A 		8
avr 1.2
(-1.5) 		1.1
(-1.8) 		0.6
(-3) 		3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.7
(-2.8)
A 		1.5
(-2)
A 		0.6
(-2.9)
A 		6.4
(3)
A 		0.5
(-3)
A 		1.7
(-1.8)
A 		6
B 1.4
(0)
A 		2.3
(3)
A 		0.9
(-1.7)
A 		0.9
(-1.7)
A 		0.5
(-3)
A 		0.8
(-2)
A 		2
C 0.9
(-2.8)
A 		0.6
(-3)
A 		1.2
(-2.5)
A 		1.8
(-2)
A 		8
(3)
A 		0.6
(-3)
A 		7
avr 1
(-2.7) 		1.5
(-1.3) 		0.9
(-3) 		3
(3) 		3
(3) 		1
(-2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12125
Sequence Type Exemplar sequence
Representative Public ID F07C4.4 NCBI
Target Description F07C4.4 /REP_DB=WormBase Gene ID /WP=CE09203 /GEN=srd-25 /TR=P91210 /GB=AAG24038.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072572 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-25) (srd-25) mRNA, complete cds. 11/11 None
SNAP00000003390 ENSEMBL cdna:SNAP chromosome:CEL140:V:7634720:7635764:1 9/11 None
GENEFINDER00000003404 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7634687:7635764:1 11/11 None
F07C4.4 ENSEMBL cdna:known chromosome:CEL140:V:7634624:7635764:1 gene:F07C4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7634624-7635765(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-25
Ensembl F07C4.4
Entrez Gene 191811 Entrez gene
SwissProt P91210 EMBL-EBI
WormBase CE09203 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504973 Serpentine Receptor, class D (delta) family member (srd-25) [Caenorhabditis elegans] gb|AAG24038.1| Serpentine receptor, class d (delta) protein 25 [Caenorhabditis elegans] sp|P91210|SRD25_CAEEL Serpentine receptor class delta-25 (Protein srd-25) 0.0
blast NP_504973 Serpentine Receptor, class D (delta) family member (srd-25) [Caenorhabditis elegans] gb|AAG24038.1| Serpentine receptor, class d (delta) protein 25 [Caenorhabditis elegans] sp|P91210|SRD25_CAEEL Serpentine receptor class delta-25 (Protein srd-25) 1.0E-169
blast NP_504973 Serpentine Receptor, class D (delta) family member (srd-25) [Caenorhabditis elegans] gb|AAG24038.1| Serpentine receptor, class d (delta) protein 25 [Caenorhabditis elegans] sp|P91210|SRD25_CAEEL Serpentine receptor class delta-25 (Protein srd-25) 1.0E-139
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 1.0E-105
blast NP_504974 Serpentine Receptor, class D (delta) family member (srd-31) [Caenorhabditis elegans] gb|AAG24040.1| Serpentine receptor, class d (delta) protein 31 [Caenorhabditis elegans] sp|P91211|SRD31_CAEEL Serpentine receptor class delta-31 (Protein srd-31) 1.0E-103
blast NP_504972 Serpentine Receptor, class D (delta) family member (srd-30) [Caenorhabditis elegans] gb|AAG24039.1| Serpentine receptor, class d (delta) protein 30 [Caenorhabditis elegans] sp|P91209|SRD30_CAEEL Serpentine receptor class delta-30 (Protein srd-30) 6.0E-97
blast NP_504974 Serpentine Receptor, class D (delta) family member (srd-31) [Caenorhabditis elegans] gb|AAG24040.1| Serpentine receptor, class d (delta) protein 31 [Caenorhabditis elegans] sp|P91211|SRD31_CAEEL Serpentine receptor class delta-31 (Protein srd-31) 7.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504973.1 7 5-27,48-70,85-107,126-148,170-192,224-246,256-278
F07C4.4 7 5-27,48-70,85-107,126-148,170-192,224-246,256-278
SNAP00000003390 5 59-81,94-116,136-158,163-180,190-212
GENEFINDER00000003404 6 13-35,70-92,105-127,149-171,203-225,235-257
Sequence
Target Sequence 
>C. ELEGANS:191033_AT
tccgtggccgtgaactatgcatcaaaaaactcgtccgtattgcattttacgtgttcattc
cttccatggttcacatgggcgtttggatcagcatctatatacttaccgaaagtgaatcag
ttttgaaaggttttggtattgaaacagatgacatgattttgagtggtgaaatcatttatt
ggtcttcaattactctccttactcaattattcatcactgcatgtttggctgttgttgcgt
atacttttattcgaaaatcgctctcaaaatttgctagaaaaatgagcgtcattaaaacaa
atgaaaaaaatttaagaaatcggctggttaaggttgccactttcaagctaattctgccat
catttatttttcttggaataactgtttttgtagccatgttcacaagacttttagactacc
agtatggtcaatacatagtctccgtgtgtttcatgttttctccagtttgttccccatatg
cgtatattatttttgttccgcactaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGTGGCCGTGAACTATGCATCAA 167 595 350 Antisense
TGCATTTTACGTGTTCATTCCTTCC 204 579 390 Antisense
GGTTCACATGGGCGTTTGGATCAGC 105 507 417 Antisense
GGATCAGCATCTATATACTTACCGA 415 511 434 Antisense
TACTCTCCTTACTCAATTATTCATC 217 647 540 Antisense
ATCACTGCATGTTTGGCTGTTGTTG 141 29 562 Antisense
TCGGCTGGTTAAGGTTGCCACTTTC 445 601 669 Antisense
GCCACTTTCAAGCTAATTCTGCCAT 118 279 685 Antisense
ATAGTCTCCGTGTGTTTCATGTTTT 168 23 784 Antisense
TTTCATGTTTTCTCCAGTTTGTTCC 319 673 798 Antisense
ATATTATTTTTGTTCCGCACTACCG 363 19 833 Antisense
Sequence Source Affymetrix Proprietary Database