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[191032_at] Zinc-binding dehydrogenases

Description M106.3 /REP_DB=WormBase Gene ID /WP=CE01606 /TR=Q09593 /GB=CAA87050.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc-binding dehydrogenases
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 0      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 450
1 2 3 4 range
A 295.3
(-1.8)
P 		242.5
(-3)
P 		343.6
(-0.7)
P 		502.8
(3)
P 		260
B 298.9
(-3)
P 		306.1
(-2.9)
P 		411.4
(-1.3)
P 		692.3
(3)
P 		393
C 352.8
(-2.3)
P 		313.5
(-3)
P 		395.3
(-1.6)
P 		662.7
(3)
P 		349
avr 315.7
(-2.5) 		287.4
(-3) 		383.4
(-1.3) 		619.3
(3) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 240.7
(-3)
P 		291.7
(-1.8)
P 		259.3
(-2.6)
P 		257
(-2.6)
P 		295
(-1.7)
P 		490.5
(3)
P 		250
B 269
(-2.2)
P 		310.4
(-1.5)
P 		243
(-2.7)
P 		225.5
(-3)
P 		365.8
(-0.5)
P 		565.8
(3)
P 		340
C 235.5
(-2.6)
P 		300.6
(-1.6)
P 		228.6
(-2.7)
P 		208.3
(-3)
P 		358.9
(-0.8)
P 		616.9
(3)
P 		409
avr 248.4
(-2.7) 		300.9
(-1.7) 		243.6
(-2.8) 		230.3
(-3) 		339.9
(-1) 		557.7
(3) 		327
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 107.5
(3)
P 		52.7
(-3)
P 		89.8
(1.1)
P 		73.6
(-0.7)
P 		55
B 95.3
(-1.4)
P 		75.6
(-3)
P 		95.3
(-1.4)
P 		147.5
(3)
P 		72
C 116.8
(0.4)
P 		90.1
(-3)
P 		137.8
(3)
P 		111.7
(-0.3)
P 		48
avr 106.5
(2.3) 		72.8
(-3) 		107.6
(2.5) 		110.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 44.4
(-3)
P 		103.7
(1.7)
P 		56.5
(-2)
P 		65.2
(-1.3)
P 		89
(0.6)
P 		119.4
(3)
P 		75
B 93.6
(-1.6)
P 		103.3
(-1.3)
P 		59
(-3)
P 		59.7
(-3)
P 		148.6
(0.5)
P 		211
(3)
P 		152
C 87.3
(-1.3)
P 		91.7
(-1.2)
P 		58.2
(-2.4)
P 		41.9
(-3)
P 		116.1
(-0.3)
P 		206.5
(3)
P 		165
avr 75.1
(-2.1) 		99.6
(-0.9) 		57.9
(-2.9) 		55.6
(-3) 		117.9
(0) 		179
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3731
Sequence Type Exemplar sequence
Representative Public ID M106.3 NCBI
Target Description M106.3 /REP_DB=WormBase Gene ID /WP=CE01606 /TR=Q09593 /GB=CAA87050.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc-binding dehydrogenases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063933 NCBI Caenorhabditis elegans M106.3 (M106.3) mRNA, complete cds. 11/11 None
M106.3 ENSEMBL cdna:known chromosome:CEL140:II:10855642:10860819:-1 gene:M106.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018719 3/11 Cross Hyb Matching Probes None
SNAP00000018720 3/11 Cross Hyb Matching Probes None
GENEFINDER00000018724 3/11 Cross Hyb Matching Probes None
GENEFINDER00000018725 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10855638-10860816(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc-binding dehydrogenases
Ensembl M106.3
Entrez Gene 174671 Entrez gene
SwissProt Q09593 EMBL-EBI
WormBase CE01606 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25793.1.S1_AT similar to zinc binding alcohol dehydrogenase, domain containing 1 cfa
CHICKEN:GGA.16852.1.S1_AT zinc binding alcohol dehydrogenase, domain containing 1 gga
CHICKEN:GGAAFFX.22856.1.S1_AT zinc binding alcohol dehydrogenase, domain containing 1 gga
HU35KSUBD:RC_AA443151_AT zinc binding alcohol dehydrogenase, domain containing 1 hs
U133_X3P:HS.98365.0.A1_3P_AT zinc binding alcohol dehydrogenase, domain containing 1 hs
HG-U133_PLUS_2:230774_AT zinc binding alcohol dehydrogenase, domain containing 1 hs
HG-U133B:230774_AT zinc binding alcohol dehydrogenase, domain containing 1 hs
HG-U95B:47626_AT zinc binding alcohol dehydrogenase, domain containing 1 hs
HG-U95D:89816_R_AT zinc binding alcohol dehydrogenase, domain containing 1 hs
MG-U74BV2:112300_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOE430A:1451744_A_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOUSE430A_2:1451744_A_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOUSE430_2:1451744_A_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOE430A:1453156_S_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOUSE430A_2:1453156_S_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOUSE430_2:1453156_S_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOE430A:1429474_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOUSE430A_2:1429474_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOUSE430_2:1429474_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOE430B:1443244_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOUSE430_2:1443244_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOE430B:1459291_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOUSE430_2:1459291_AT zinc binding alcohol dehydrogenase, domain containing 1 mm
MOE430B:1433503_AT Zinc binding alcohol dehydrogenase, domain containing 1 (Zadh1), mRNA mm
MOUSE430_2:1433503_AT Zinc binding alcohol dehydrogenase, domain containing 1 (Zadh1), mRNA mm
MG-U74BV2:162952_AT Zinc binding alcohol dehydrogenase, domain containing 1 (Zadh1), mRNA mm
MU19KSUBB:TC30561_AT Zinc binding alcohol dehydrogenase, domain containing 1 (Zadh1), mRNA mm
MU19KSUBC:TC40402_AT Zinc binding alcohol dehydrogenase, domain containing 1 (Zadh1), mRNA mm
RG-U34C:RC_AI101538_AT zinc binding alcohol dehydrogenase, domain containing 1 (predicted) rn
RAE230B:1377844_AT zinc binding alcohol dehydrogenase, domain containing 1 (predicted) rn
RAT230_2:1377844_AT zinc binding alcohol dehydrogenase, domain containing 1 (predicted) rn
RAE230B:1384345_AT zinc binding alcohol dehydrogenase, domain containing 1 (predicted) rn
RAT230_2:1384345_AT zinc binding alcohol dehydrogenase, domain containing 1 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4024 alcohol dehydrogenase activity, zinc-dependent inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87050 Hypothetical protein M106.3 [Caenorhabditis elegans] ref|NP_496334.1| M106.3 [Caenorhabditis elegans] 0.0
blast CAE59595 Hypothetical protein CBG03002 [Caenorhabditis briggsae] 1.0E-156
blast NP_001026366 zinc binding alcohol dehydrogenase, domain containing 1 [Gallus gallus] emb|CAH65414.1| hypothetical protein [Gallus gallus] 4.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 2.3E-30
Sequence
Target Sequence 
>C. ELEGANS:191032_AT
gaggctgtggctcagttgtcagaatggttacaacaggataagattaaggtgaaagagaca
atctacgatggcctcaacgctgctccaagtgcatttgtcgatatgatgaatggaaagaat
attggaaaaatgcttattcatttttcgcattatgaaaaattgaattttttcccaaaattc
aaaaattttcgtttttttttcggaaaaaattctgtaaaggaaattatcatggaagtttta
aaaacgagagaaacgatgctcacaaatcaagaagttctttcatttctgaatgctctcaaa
aaagaagaagataataaacagcaacatgagcggtgtaagcagctttcaactgtcatctac
gagacgaaaaaatatctgaatacgagcccagcagtgacgcagaacgaggcagtcatttgt
gagcttattcctaaattagcacccttcaaactcactggcgcggaaactctgcaagttatc
aatttgagaccatcgaccacagctgatatccaactgctaatcgaagaaacagaagaacga
ttcccatctgaagagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCTGTGGCTCAGTTGTCAGAAT 71 407 988 Antisense
GAGACAATCTACGATGGCCTCAACG 635 391 1042 Antisense
TGCTCCAAGTGCATTTGTCGATATG 132 583 1068 Antisense
AGTTCTTTCATTTCTGAATGCTCTC 170 65 1260 Antisense
GCAGCTTTCAACTGTCATCTACGAG 628 313 1326 Antisense
TGAATACGAGCCCAGCAGTGACGCA 701 575 1364 Antisense
GGCAGTCATTTGTGAGCTTATTCCT 123 537 1395 Antisense
TAAATTAGCACCCTTCAAACTCACT 213 641 1419 Antisense
ACTGGCGCGGAAACTCTGCAAGTTA 95 97 1441 Antisense
GACCACAGCTGATATCCAACTGCTA 86 385 1482 Antisense
GAAGAACGATTCCCATCTGAAGAGG 612 339 1519 Antisense
Sequence Source Affymetrix Proprietary Database