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[191029_at] 7TM chemoreceptor, srh family

Description C02E7.3 /REP_DB=WormBase Gene ID /WP=CE07840 /GEN=srh-20 /TR=O16432 /GB=AAC24162.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 01      4grp_total > 05      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 32.1
(3)
A 		30.5
(2.1)
A 		21.7
(-3)
A 		25.1
(-1)
A 		10
B 59.7
(0.5)
A 		5.9
(-3)
A 		33.6
(-1.2)
A 		97.5
(3)
P 		92
C 42.4
(-1.5)
A 		35.5
(-2)
A 		18.8
(-3)
A 		115.1
(3)
P 		96
avr 44.7
(-0.8) 		24
(-3) 		24.7
(-2.9) 		79.2
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 45.3
(0.2)
A 		76.1
(2.9)
A 		57.7
(1.3)
A 		8.4
(-3)
A 		31.8
(-1)
A 		77.8
(3)
A 		69
B 42.3
(-0.7)
A 		57.9
(3)
A 		33.6
(-2.8)
A 		32.9
(-3)
A 		46.1
(0.2)
A 		37.3
(-1.9)
A 		25
C 59.7
(2.6)
A 		62.7
(3)
A 		7.8
(-3)
A 		48.2
(1.4)
A 		63.1
(3)
A 		56.5
(2.3)
A 		55
avr 49.1
(0.2) 		65.6
(3) 		33
(-2.5) 		29.8
(-3) 		47
(-0.1) 		57.2
(1.6) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11.7
(3)
A 		6.6
(-0.8)
A 		5.7
(-1.5)
A 		3.7
(-3)
A 		8
B 19
(2.4)
A 		1.5
(-3)
A 		7.8
(-1)
A 		20.8
(3)
P 		19
C 14
(0.5)
A 		10.2
(-1.3)
A 		6.6
(-3)
A 		19.4
(3)
P 		13
avr 14.9
(3) 		6.1
(-3) 		6.7
(-2.6) 		14.6
(2.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 8.3
(-1.5)
A 		27
(3)
A 		12.6
(-0.5)
A 		2.1
(-3)
A 		9.6
(-1.2)
A 		18.9
(1)
A 		25
B 14.7
(0.5)
A 		19.3
(3)
A 		8.2
(-3)
A 		8.7
(-2.7)
A 		18.7
(2.7)
A 		13.9
(0.1)
A 		11
C 22.1
(3)
A 		19.1
(2.1)
A 		2
(-3)
A 		9.7
(-0.7)
A 		20.4
(2.5)
A 		18.9
(2)
A 		20
avr 15
(0.3) 		21.8
(3) 		7.6
(-2.7) 		6.8
(-3) 		16.2
(0.8) 		17.2
(1.2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191029_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15404
Sequence Type Exemplar sequence
Representative Public ID C02E7.3 NCBI
Target Description C02E7.3 /REP_DB=WormBase Gene ID /WP=CE07840 /GEN=srh-20 /TR=O16432 /GB=AAC24162.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071923 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-20) (srh-20) mRNA, complete cds. 11/11 None
GENEFINDER00000015198 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4923106:4927782:1 11/11 None
C02E7.3 ENSEMBL cdna:known chromosome:CEL140:V:4924732:4926005:1 gene:C02E7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4924731-4926005(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-20
Ensembl C02E7.3
Entrez Gene 191847 Entrez gene
SwissProt O16432 EMBL-EBI
WormBase CE07840 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-179
blast AAC24162 Serpentine receptor, class h protein 20 [Caenorhabditis elegans] ref|NP_504324.1| Serpentine Receptor, class H family member (srh-20) [Caenorhabditis elegans] 1.0E-168
blast AAC24163 Serpentine receptor, class h protein 22 [Caenorhabditis elegans] ref|NP_504323.1| Serpentine Receptor, class H family member (srh-22) [Caenorhabditis elegans] 1.0E-156
blast AAC24164 Serpentine receptor, class h protein 23 [Caenorhabditis elegans] ref|NP_504322.1| Serpentine Receptor, class H family member (srh-23) [Caenorhabditis elegans] 1.0E-125
blast AAC24163 Serpentine receptor, class h protein 22 [Caenorhabditis elegans] ref|NP_504323.1| Serpentine Receptor, class H family member (srh-22) [Caenorhabditis elegans] 5.0E-91
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 1.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.3E-5
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.7E-18
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-22
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.7E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504324.1 7 15-36,86-108,128-150,170-189,199-221,241-263,273-295
C02E7.3 7 15-36,86-108,128-150,170-189,199-221,241-263,273-295
GENEFINDER00000015198 15 13-35,164-186,210-232,239-261,313-335,390-412,427-449,456-478,532-554,574-596,611-633,646-668,714-736,765-787,792-814
Sequence
Target Sequence 
>C. ELEGANS:191029_AT
atcaggacttttgctctccttagtttgatattttctcttgcaactatgcatgaaacgtca
cgatttcaacttgctcaaaaatctgattttttgaagttaaatcctttagtaacaattgta
aactgcgacacagtttatctcattgttccattttccgattatgtttcatcaatcacctct
acattgtggctttctcaaacaagcttgctcattattttggtaccaagcacaactttgttt
gtaaagttcaatttgccaacttccatatcagaaactacattaaaagttcaaaatcaacta
ctgaaaagtttggtatttcaaacaattatccacgcaataatgttgggtatacctaattgt
atgtttatatatgcattcttcaatggatataaagatgaaacgctggcctacattgcattt
atctgcttaacctaccacggatttgcttcgacacttgccttgataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGGACTTTTGCTCTCCTTAGTT 660 27 424 Antisense
TGATATTTTCTCTTGCAACTATGCA 243 565 449 Antisense
AACGTCACGATTTCAACTTGCTCAA 280 145 477 Antisense
GCGACACAGTTTATCTCATTGTTCC 503 289 548 Antisense
ATTATGTTTCATCAATCACCTCTAC 371 13 581 Antisense
TCACCTCTACATTGTGGCTTTCTCA 112 627 596 Antisense
CAATTTGCCAACTTCCATATCAGAA 139 181 672 Antisense
AAACGCTGGCCTACATTGCATTTAT 81 127 821 Antisense
TGCATTTATCTGCTTAACCTACCAC 499 577 837 Antisense
TAACCTACCACGGATTTGCTTCGAC 467 637 851 Antisense
TTGCTTCGACACTTGCCTTGATAAT 333 701 866 Antisense
Sequence Source Affymetrix Proprietary Database