[Home] | [Total List]

[191027_at] 7TM chemoreceptor, srsx family

Description C03G6.16 /REP_DB=WormBase Gene ID /WP=CE07890 /TR=O01459 /GB=AAB52300.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor
Cluster 6grp_total > 93      4grp_total > 04      6grp_cgc > 99      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 12.4
(-2.3)
A 		2.5
(-3)
A 		4.3
(-2.9)
A 		82
(3)
A 		80
B 8.7
(-2.8)
A 		5.1
(-3)
A 		5.7
(-3)
A 		92
(3)
A 		87
C 41.7
(-0.6)
A 		8
(-2.7)
A 		3
(-3)
A 		99.2
(3)
P 		96
avr 20.9
(-1.9) 		5.2
(-2.9) 		4.3
(-3) 		91.1
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 8.9
(-2.4)
A 		14.9
(-1.5)
A 		36.5
(1.5)
A 		4.4
(-3)
A 		47
(3)
A 		24.2
(-0.2)
A 		43
B 34.5
(2.7)
A 		5.6
(-2.9)
A 		22.1
(0.3)
A 		5.3
(-3)
A 		36.1
(3)
A 		23.5
(0.5)
A 		31
C 7.3
(-3)
A 		58.9
(3)
A 		18.5
(-1.7)
A 		41.6
(1)
A 		16.9
(-1.9)
A 		17.9
(-1.8)
A 		52
avr 16.9
(-3) 		26.5
(0.5) 		25.7
(0.2) 		17.1
(-2.9) 		33.3
(3) 		21.9
(-1.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 4.5
(-0.9)
A 		0.5
(-3)
A 		1.1
(-2.7)
A 		12
(3)
A 		12
B 2.8
(-2.5)
A 		1.3
(-3)
A 		1.3
(-3)
A 		19.6
(3)
A 		18
C 13.8
(1.9)
A 		2.3
(-2.5)
A 		1
(-3)
A 		16.7
(3)
P 		16
avr 7
(-0.6) 		1.4
(-2.9) 		1.1
(-3) 		16.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.6
(-2.8)
A 		5.3
(-1.1)
A 		7.9
(0.1)
A 		1.1
(-3)
A 		14.2
(3)
A 		5.9
(-0.8)
A 		13
B 12
(1.8)
A 		1.9
(-2.8)
A 		5.4
(-1.2)
A 		1.4
(-3)
A 		14.7
(3)
A 		8.8
(0.3)
A 		13
C 2.7
(-3)
A 		18
(3)
A 		4.7
(-2.2)
A 		8.4
(-0.8)
A 		5.5
(-1.9)
A 		6
(-1.7)
A 		15
avr 5.4
(-1.6) 		8.4
(0.6) 		6
(-1.2) 		3.6
(-3) 		11.5
(3) 		6.9
(-0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11616
Sequence Type Exemplar sequence
Representative Public ID C03G6.16 NCBI
Target Description C03G6.16 /REP_DB=WormBase Gene ID /WP=CE07890 /TR=O01459 /GB=AAB52300.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072486 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-24) (srsx-24) mRNA, complete cds. 11/11 None
GENEFINDER00000031570 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7380490:7383643:-1 11/11 None
C03G6.16 ENSEMBL cdna:known chromosome:CEL140:V:7380490:7382077:-1 gene:C03G6.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7380490-7382078(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-24
Ensembl C03G6.16
Entrez Gene 182178 Entrez gene
SwissProt O01459 EMBL-EBI
WormBase CE07890 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52300 Serpentine receptor, class sx protein 24 [Caenorhabditis elegans] ref|NP_504887.1| Serpentine Receptor, class SX family member (srsx-24) [Caenorhabditis elegans] 1.0E-171
blast AAB52316 Hypothetical protein C03G6.17 [Caenorhabditis elegans] ref|NP_504888.2| C03G6.17 [Caenorhabditis elegans] 1.0E-146
blast AAK73896 Hypothetical protein T24A6.20 [Caenorhabditis elegans] ref|NP_503996.2| T24A6.20 [Caenorhabditis elegans] 1.0E-114
blast AAA83471 Serpentine receptor, class sx protein 22 [Caenorhabditis elegans] ref|NP_505153.2| Serpentine Receptor, class SX family member (srsx-22) [Caenorhabditis elegans] 1.0E-74
blast CAB60603 Hypothetical protein Y62E10A.4 [Caenorhabditis elegans] ref|NP_502569.1| Serpentine Receptor, class SX family member (srsx-25) [Caenorhabditis elegans] 9.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504887.1 7 10-31,43-65,80-102,122-144,167-189,210-232,242-264
C03G6.16 7 10-31,43-65,80-102,122-144,167-189,210-232,242-264
GENEFINDER00000031570 7 280-302,315-337,352-374,394-416,439-461,482-504,514-536
Sequence
Target Sequence 
>C. ELEGANS:191027_AT
ttaccttgtgtgctttgatttccttactagtcacgttttgcaagtttgttttttattcag
atgaagtggtaactaattgtctcctgagcactgcacttcacggtatcccatttaaaattt
ggcagttcatgaattttttcataactgtggctgtaatttttgtttacagcttggctcata
taaatttccaaactttaaaaaaaagtaccgttcatatgaaaactgcaaaatcagtcgatc
gaattatgaagtcaatgctgatagtcatcgcattctacgtttgtacttggactcttgggc
tttgtgggatgtttttgtctcagtttttacaagctgacgatattcatgcatttattattc
agaagttatctggatggctcgtcctttctaattcttctctcaatgtttttatttactttt
ggagaactcccgattacagaaaagcaattttgaaactttttggtatatccaagtccgtcg
tggattcaaggattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACCTTGTGTGCTTTGATTTCCTT 380 681 389 Antisense
GATTTCCTTACTAGTCACGTTTTGC 320 427 405 Antisense
TAATTGTCTCCTGAGCACTGCACTT 261 635 462 Antisense
TGCACTTCACGGTATCCCATTTAAA 256 577 480 Antisense
GATAGTCATCGCATTCTACGTTTGT 212 425 648 Antisense
CTACGTTTGTACTTGGACTCTTGGG 304 225 663 Antisense
GACTCTTGGGCTTTGTGGGATGTTT 608 373 678 Antisense
GTGGGATGTTTTTGTCTCAGTTTTT 576 487 692 Antisense
AAGTTATCTGGATGGCTCGTCCTTT 265 157 751 Antisense
GGAGAACTCCCGATTACAGAAAAGC 626 509 809 Antisense
AAGTCCGTCGTGGATTCAAGGATTC 303 159 859 Antisense
Sequence Source Affymetrix Proprietary Database