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[191026_s_at] chemoreceptor

Description C14F11.3 /REP_DB=WormBase Gene ID /WP=CE28282 /GEN=gur-2 /TR=Q17990 /GB=AAA80362.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 25      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 51      6grp_total > 14      4grp_total > 03      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > 01_02      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2583
1 2 3 4 range
A 661.1
(-2.2)
P 		581.1
(-2.3)
P 		298.6
(-3)
P 		2866
(3)
P 		2567
B 767.8
(-1.8)
P 		521.2
(-2.4)
P 		299.1
(-3)
P 		2611.3
(3)
P 		2312
C 716.9
(-1.9)
P 		369.4
(-2.8)
P 		283.5
(-3)
P 		2675.2
(3)
P 		2392
avr 715.3
(-2) 		490.6
(-2.5) 		293.7
(-3) 		2717.5
(3) 		2424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 466
1 2 3 4 5 6 range
A 859.7
(3)
P 		696.1
(0.6)
P 		529.8
(-1.8)
P 		596.9
(-0.8)
P 		443
(-3)
P 		473.8
(-2.6)
P 		417
B 683.5
(2.4)
P 		712.6
(3)
P 		488.2
(-1.6)
P 		531.1
(-0.7)
P 		419
(-3)
P 		474.6
(-1.9)
P 		294
C 659.9
(3)
P 		660.4
(3)
P 		509.9
(-0.4)
P 		574.4
(1.1)
P 		393.8
(-3)
P 		465
(-1.4)
P 		267
avr 734.4
(3) 		689.7
(2.2) 		509.3
(-1.3) 		567.5
(-0.2) 		418.6
(-3) 		471.1
(-2) 		316
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 487
1 2 3 4 range
A 240.7
(-0.1)
P 		126.1
(-2.2)
P 		78.1
(-3)
P 		419.5
(3)
P 		341
B 244.8
(-0.8)
P 		128.7
(-2.3)
P 		69.3
(-3)
P 		556.5
(3)
P 		487
C 237.3
(-0.6)
P 		106.2
(-2.9)
P 		98.8
(-3)
P 		451.1
(3)
P 		352
avr 240.9
(-0.6) 		120.3
(-2.4) 		82.1
(-3) 		475.7
(3) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 158.5
(-1)
P 		247.6
(3)
P 		115.4
(-3)
P 		151.4
(-1.4)
P 		133.7
(-2.2)
P 		115.4
(-3)
P 		132
B 237.8
(3)
P 		237.2
(3)
P 		118.6
(-3)
P 		140.7
(-1.9)
P 		170.2
(-0.4)
P 		177
(-0.1)
P 		119
C 244.6
(3)
P 		201.5
(1)
P 		129.8
(-2.3)
P 		115.5
(-3)
P 		127.4
(-2.4)
P 		155.7
(-1.1)
P 		129
avr 213.6
(2.2) 		228.8
(3) 		121.3
(-3) 		135.9
(-2.2) 		143.8
(-1.7) 		149.4
(-1.4) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191026_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16436
Sequence Type Exemplar sequence
Representative Public ID C14F11.3 NCBI
Target Description C14F11.3 /REP_DB=WormBase Gene ID /WP=CE28282 /GEN=gur-2 /TR=Q17990 /GB=AAA80362.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076642 NCBI Caenorhabditis elegans C14F11.3 (chemoreceptor) mRNA, complete cds. 11/11 None
C14F11.3.1 ENSEMBL cdna:known chromosome:CEL140:X:6225807:6230658:-1 gene:C14F11.3 11/11 None
C14F11.3.2 ENSEMBL cdna:known chromosome:CEL140:X:6226088:6230658:-1 gene:C14F11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008172 7/11 Cross Hyb Matching Probes None
GENEFINDER00000008182 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6226235-6228594(-) 100.0 100.0
Public Domain and Genome References
Gene Title chemoreceptor
Gene Symbol gur-2
Ensembl C14F11.3
Entrez Gene 180894 Entrez gene
SwissProt Q17990 EMBL-EBI
WormBase CE29579 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80362 Gustatory receptor family protein 2 [Caenorhabditis elegans] ref|NP_509043.3| C14F11.3 [Caenorhabditis elegans] 0.0
blast AAK70488 putative chemoreceptor GUR-2 [Caenorhabditis elegans] 0.0
blast CAE61213 Hypothetical protein CBG05007 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509043.3 8 47-64,71-88,115-137,165-187,211-233,288-310,325-347,402-419
C14F11.3.1 8 47-64,71-88,115-137,165-187,211-233,288-310,325-347,402-419
C14F11.3.2 8 47-64,71-88,115-137,165-187,211-233,288-310,325-347,402-419
Sequence
Target Sequence 
>C. ELEGANS:191026_S_AT
gtcatccgtcgttcgatcaagcatctgatcaatgaaatggtacctgccgagcaagatgag
tgcccgcttcctgaatcgtcgttacaaaaaattcacgattgtcaaatcagttatcaaaga
atttttaacggaaaagctgtaattgaagagtactactcgtttgttttgttctactcatat
ggtgtttgcattccaattttctgtttcttgatgtttgtcggaatgagtgcccagtcgatt
tgctggtccgaagttgtttccattgtgatttggattgtcaatgccattcttgtcctcttg
ctgttcagcttaccagcattcatgatcaatgaagatggagatcgtcttgttgcttcgtcc
ttccgaatgtatcacgaaactttccatgaggaaagagatttgaccgttttggtatctcaa
atgacattcttcaccttccaaattcactcgaccaaactgacattatccgcttgcaactac
ttctacatggatcgctccattcttctctcgctcttctcggcaatcctcacctacttcctc
atcctctgggaatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATCCGTCGTTCGATCAAGCATC 509 467 610 Antisense
TGCCGAGCAAGATGAGTGCCCGCTT 419 585 654 Antisense
CCGCTTCCTGAATCGTCGTTACAAA 269 261 673 Antisense
TACTCGTTTGTTTTGTTCTACTCAT 160 647 763 Antisense
GAGTGCCCAGTCGATTTGCTGGTCC 447 401 834 Antisense
TCCTCTTGCTGTTCAGCTTACCAGC 170 593 902 Antisense
GCTTCGTCCTTCCGAATGTATCACG 222 307 961 Antisense
AAATGACATTCTTCACCTTCCAAAT 386 117 1028 Antisense
GACATTATCCGCTTGCAACTACTTC 139 371 1068 Antisense
CAACTACTTCTACATGGATCGCTCC 27 189 1083 Antisense
TACTTCCTCATCCTCTGGGAATTTG 467 645 1141 Antisense
Sequence Source Affymetrix Proprietary Database